PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110402_P02
Common NameLOC100191993
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 301aa    MW: 31253.5 Da    PI: 10.0293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110402_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-073357226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k ++C  f+ t  C++G++C+F H 
  GRMZM2G110402_P02 33 KSKPCTKFFSTAGCPFGASCHFLHN 57
                       7789********************7 PP
2zf-CCCH20.11.2e-0699124227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+ C+ +     Ck G++C+FaHg+
  GRMZM2G110402_P02  99 KTRMCNKYNTAEGCKWGSKCHFAHGE 124
                        89**********************96 PP
3zf-CCCH36.67.8e-12267292127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC +f + G C +GdrC+FaHg+
  GRMZM2G110402_P02 267 FKTKLCENFNK-GSCTFGDRCHFAHGE 292
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9153159IPR000571Zinc finger, CCCH-type
SMARTSM003560.33158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-83257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-63259IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-53357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-1493129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.55897125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-897128IPR000571Zinc finger, CCCH-type
SMARTSM003561.497124IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.61E-14166239IPR004088K Homology domain, type 1
SMARTSM003222.1E-10168238IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.3E-15169237IPR004088K Homology domain, type 1
PROSITE profilePS5008415.137169233IPR004088K Homology domain, type 1
CDDcd001051.31E-13171233No hitNo description
PfamPF000134.0E-11171234IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.2E-17264298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718266293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-9266297IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7266292IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9267292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDTGRKRTAP EGANGAGGPK RARESETTGV GSKSKPCTKF FSTAGCPFGA SCHFLHNFPG  60
GYQAVSKMTN LGGPPVPAPP GRMPMGPGGP DGPPSPAVKT RMCNKYNTAE GCKWGSKCHF  120
AHGERELGKP LQMDNPMGPP PMGPGPNGHF MPPPMPFPDM VPPSTFGASA TAKISVDASL  180
AGAIIGKGGT NTKHISRVTG AKLAIRDNEA DPNHKNIELE GTFDQIKHAS AMVTELIVRI  240
SGKPPPQAKN NPGRGPGSHA GGPGSNFKTK LCENFNKGSC TFGDRCHFAH GEGELRKPAA  300
A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.677780.0cell lignification| embryo| endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110402
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110402_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130889.10.0zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ69XQ31e-167C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLB4FAX80.0B4FAX8_MAIZE; Zinc finger CCCH domain-containing protein 52
TrEMBLK4JRV10.0K4JRV1_MAIZE; C3H-type transcription factor (Fragment)
STRINGGRMZM2G110402_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-50C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]