PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110333_P01
Common NameEREB90, Zm.93768
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 363aa    MW: 39623.9 Da    PI: 4.6864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110333_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19111159355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r+++ +g+W+AeIrdp     +  r++lg+f ++eeAa+a++a +++++g
  GRMZM2G110333_P01 111 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 159
                        9*******.**********94....35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-21110168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-31110168IPR001471AP2/ERF domain
SMARTSM003804.0E-35110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.538110167IPR001471AP2/ERF domain
PRINTSPR003671.2E-10111122IPR001471AP2/ERF domain
PfamPF008478.9E-12111159IPR001471AP2/ERF domain
CDDcd000185.97E-32111169No hitNo description
PRINTSPR003671.2E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCGGAILANL REPAPRRLTE RDIWQQKKKL KRGGGGGRRS FAAEDDEDFE ADFEVFEADS  60
SDSDLELREG TDDDVVEIKP FTAKRTFSSD GLSTMTSAVA RSAKRKRKNL YRGIRQRPWG  120
KWAAEIRDPQ KGVRVWLGTF NSPEEAARAY DAEARRIRGK KAKVNFPDAP AVGQKHRSGS  180
ASAKASKSSF GQKPIVKVAM NNLANTNASF FQSASYPSNL FVQHGNMPFV PAMNSTASVD  240
DLIMNLHSDQ GSNSFGCSDL GWENDTKTPD ITSIAPISTI AEGDESAFVD SNSNSSFVLP  300
ALENSAVDLT DGLTDLESYM RFLLDGGPSD SVDSLLNLDG SQDVGSDMDL WSFDDMPIVG  360
DFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19111167663ATERF1
3gcc_A3e-19111167663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.937680.0aerial organ| ear| embryo| endosperm| meristem| ovary| pedicel| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110333
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110333_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432700.0BT043270.1 Zea mays full-length cDNA clone ZM_BFc0138G02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150246.10.0ethylene response element binding protein
SwissprotQ6K7E61e-144ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLB4G1N20.0B4G1N2_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G110333_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.22e-37related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]