PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G110333_P01 | ||||||||
Common Name | EREB90, Zm.93768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 39623.9 Da PI: 4.6864 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 111 | 159 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f ++eeAa+a++a +++++g GRMZM2G110333_P01 111 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 159 9*******.**********94....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-21 | 110 | 168 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 110 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-35 | 110 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.538 | 110 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 111 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-12 | 111 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.97E-32 | 111 | 169 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MCGGAILANL REPAPRRLTE RDIWQQKKKL KRGGGGGRRS FAAEDDEDFE ADFEVFEADS 60 SDSDLELREG TDDDVVEIKP FTAKRTFSSD GLSTMTSAVA RSAKRKRKNL YRGIRQRPWG 120 KWAAEIRDPQ KGVRVWLGTF NSPEEAARAY DAEARRIRGK KAKVNFPDAP AVGQKHRSGS 180 ASAKASKSSF GQKPIVKVAM NNLANTNASF FQSASYPSNL FVQHGNMPFV PAMNSTASVD 240 DLIMNLHSDQ GSNSFGCSDL GWENDTKTPD ITSIAPISTI AEGDESAFVD SNSNSSFVLP 300 ALENSAVDLT DGLTDLESYM RFLLDGGPSD SVDSLLNLDG SQDVGSDMDL WSFDDMPIVG 360 DFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 111 | 167 | 6 | 63 | ATERF1 |
3gcc_A | 3e-19 | 111 | 167 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.93768 | 0.0 | aerial organ| ear| embryo| endosperm| meristem| ovary| pedicel| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G110333 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G110333_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043270 | 0.0 | BT043270.1 Zea mays full-length cDNA clone ZM_BFc0138G02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150246.1 | 0.0 | ethylene response element binding protein | ||||
Swissprot | Q6K7E6 | 1e-144 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | B4G1N2 | 0.0 | B4G1N2_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G110333_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 2e-37 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G110333_P01 |