PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110242_P01
Common NameBAD1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 276aa    MW: 29902.1 Da    PI: 6.4366
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110242_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.84.8e-35112189374
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......e 74 
                         ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai  l+  + +s++++       
  GRMZM2G110242_P01 112 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIERLAAATEPSHQRSddaafsP 189
                        689************************************************************777774442222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-33113185IPR005333Transcription factor, TCP
PROSITE profilePS5136934.52113171IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLPYPNNPHH FGVSQELPHP NPTAGFPMPP PGAHLDQRYY VDHHFFPGHG HCFNSETLEA  60
VLRPARAAPE CDEALVVTAP QAGGRRNGSL PAAAAAGQGQ GQGHARARKR PFRTDRHSKI  120
RTAQGVRDRR MRLSLDVARD FFALQDRLGF DKASKTVDWL LTQSKPAIER LAAATEPSHQ  180
RSDDAAFSPP TSGVADVSAG NKSGGVAEKL GRSRSGGSAS MEMERACGLD RLVSAAPVLR  240
EYYYGLSEMM SNDNGGDGDD DGEYEEDGDF LDGMQY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110242
Function -- GeneRIF ? help Back to Top
  1. BAD1 is a TCP class II gene that functions to promote cell proliferation in the pulvinus, and influences inflorescence architecture by impacting the angle of lateral branch emergence.
    [PMID: 22773815]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110242_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332000.0BT033200.1 Zea mays full-length cDNA clone ZM_BFb0012O05 mRNA, complete cds.
GenBankBT0610810.0BT061081.1 Zea mays full-length cDNA clone ZM_BFb0095I10 mRNA, complete cds.
GenBankJX1227650.0JX122765.1 Zea mays BRANCH ANGLE DEFECTIVE 1 (BAD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130082.10.0uncharacterized protein LOC100191175
TrEMBLB4F7W20.0B4F7W2_MAIZE; BRANCH ANGLE DEFECTIVE 1
STRINGGRMZM2G110242_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.13e-28TCP family protein
Publications ? help Back to Top
  1. Bai F,Reinheimer R,Durantini D,Kellogg EA,Schmidt RJ
    TCP transcription factor, BRANCH ANGLE DEFECTIVE 1 (BAD1), is required for normal tassel branch angle formation in maize.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(30): p. 12225-30
    [PMID:22773815]