PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G110107_P02 | ||||||||
Common Name | Zm.100090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 483aa MW: 52050.1 Da PI: 9.519 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.7e-06 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H GRMZM2G110107_P02 67 YVCEICGQGFQRDQNLQMHRRRH 89 9*********************9 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00081 | 146 | 167 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ GRMZM2G110107_P02 146 ACARCSKAYAVHSDYKAHLKTC 167 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.26E-5 | 64 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 66 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0032 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 136 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 230 | 145 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MLGFCAPSAC SPPDEATPEP FRSLQIATTV AAAAATTKKK RRPAGTPDPD AEVVSLSPRT 60 LLESDRYVCE ICGQGFQRDQ NLQMHRRRHK VPWKLLKREA GEAARKRVFV CPEPSCLHHH 120 PSHALGDLVG IKKHFRRKHS GQRQWACARC SKAYAVHSDY KAHLKTCGTR GHSCDCGRVF 180 SRVESFIEHQ DSCNAGQARA GAGVAAASAG SQQQAPPAMS LSRTASSTSP SSDIAISPVA 240 AWPAGPAPAI PSPASTAAFH WFEQVPSPRT PPPSVHHRGG HNLELQLMPP SCSGAGGDAP 300 PRTPAAPSQS HAAAMAMQLQ LSIGVCGDAG DEVLAAAREE EAREQLRQAV AEKAAADEAR 360 AQAKRQAELA ERELASAKRM RRQAQVELSR AHAVRDHALR QVNATLLQIT CLGCRHKFHA 420 RPQLDAVPAR WPAAAATCPP SMAFFLGLAE AEADPSSQQP MQMQMRQEQK RANNLAIVKR 480 FII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-17 | 141 | 195 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 3e-17 | 141 | 195 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 41 | KKKRR |
2 | 37 | 42 | KKKRRP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G110107 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G110107_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972831 | 0.0 | EU972831.1 Zea mays clone 388824 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460306.1 | 0.0 | protein indeterminate-domain 16 | ||||
Swissprot | Q9C9X7 | 1e-127 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A1D6ERC9 | 0.0 | A0A1D6ERC9_MAIZE; Protein SHOOT GRAVITROPISM 5 | ||||
STRING | GRMZM2G110107_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 7e-99 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G110107_P02 |
Publications ? help Back to Top | |||
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