PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110067_P01
Common NameLOC103636180
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 526aa    MW: 54677.3 Da    PI: 7.1968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110067_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.21.7e-591465212374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..fs 85 
                        ++lL  cA+av++g+l+++q+l   l elas +gd+++Rlaa+ + ALa+ l    ++  ++++++ + +  +      + +l+  +l  f+
  GRMZM2G110067_P01 146 EQLLNPCATAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLHALARMLPAaVGPAAAATVRVPPCECPTpgfagAEPRLFRASLikFH 237
                        689*************************************************98567777777755555444455665333333333379** PP

               GRAS  86 evsPilkfshltaNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetger 164
                        evsP++ + + +aN aI +a+++          + +H++D+++s+G+QWp+Ll++L+  p  + pps+R+T+ g+p +    +         
  GRMZM2G110067_P01 238 EVSPWFALPNALANAAIAQAAASGsggrggsepRSLHVVDLGVSHGVQWPTLLESLTRLPggRAPPSVRLTVAGAPPAPfsASPPGYDFSPH 329
                        *******************98765577777788999************************656699*******9987667888899999*** PP

               GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                        L ++A+++++++ ++     + +  +++ L+ +p gEal+V+l+++l +        ++er+e+L+ v++l+P++vvv+e +    +++ + 
  GRMZM2G110067_P01 330 LLRYAKSIDLRLAISR----AASLDSVHGLASSPsGEALVVCLQFRLGHAG------ADERTEILRKVRGLNPELVVVSELDGGG-DGTAAG 410
                        *************998....455556699*99999***********99998......556899****************999876.88889* PP

               GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                        +f+  le  + +++s++a +    + r   Er+ll+ e+   va e a         e Wrer+  aGF++++++++a+++ak+llrk++ +
  GRMZM2G110067_P01 411 EFTARLELLWRFLESTSAAF----KGRDGEERRLLEAEAGTSVASEAAG-----AGREAWRERMVVAGFEAAAFGDEAVESAKSLLRKYDgG 493
                        ****************8886....6777778888888899999999998.....66779*******************************88 PP

               GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                        ++++     g++ l Wk++p+ ++S Wr
  GRMZM2G110067_P01 494 WEMSASGTAGAVALRWKGQPVSFCSLWR 521
                        8888889999*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.736119500IPR005202Transcription factor GRAS
PfamPF035145.8E-57146521IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKPMSCHEQE HPELAATTTN SGFDWLEDPI SFLTADVDIA GGGYGWWSDP AAAQQDGIGS  60
VVAQTLSPPA PLLAHTSPSI ASPVVSEPSS KKRKSPAHRA SASTGSNQRR RADQDRPGAG  120
SSSGGSKRSG SKGGGAGSDR DTRWAEQLLN PCATAVEAGN LSRVQHLFYV LGELASFSGD  180
ANHRLAAHGL HALARMLPAA VGPAAAATVR VPPCECPTPG FAGAEPRLFR ASLIKFHEVS  240
PWFALPNALA NAAIAQAAAS GSGGRGGSEP RSLHVVDLGV SHGVQWPTLL ESLTRLPGGR  300
APPSVRLTVA GAPPAPFSAS PPGYDFSPHL LRYAKSIDLR LAISRAASLD SVHGLASSPS  360
GEALVVCLQF RLGHAGADER TEILRKVRGL NPELVVVSEL DGGGDGTAAG EFTARLELLW  420
RFLESTSAAF KGRDGEERRL LEAEAGTSVA SEAAGAGREA WRERMVVAGF EAAAFGDEAV  480
ESAKSLLRKY DGGWEMSASG TAGAVALRWK GQPVSFCSLW RPACSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-1815252226380Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110067
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110067_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280150.0KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656755.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A1D6K5G00.0A0A1D6K5G0_MAIZE; Scarecrow-like protein 29
STRINGGRMZM2G110067_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-70GRAS family protein