PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G109879_P01 | ||||||||
Common Name | ABI28, LOC103646788, Zm.26595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 552aa MW: 61859.6 Da PI: 10.4454 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.3 | 1.2e-12 | 38 | 111 | 26 | 99 |
T.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 26 h.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + g+ +e+ t + ++ g++W+v++ + + + l++GW eF a+g+ g fvv++++g ++ l+vkvf++ GRMZM2G109879_P01 38 CfdageGEGAPEP-TALVVSPFGKVWRVEV--VRDGHGASLGRGWAEFLAAHGVGIGWFVVLRYEG--GGALTVKVFDT 111 2466652233355.788899**********..77777788***********************987..6678*****97 PP | |||||||
2 | B3 | 39.9 | 7.5e-13 | 145 | 228 | 9 | 96 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++l+++ ++lp +f++++ +++ +s+ ++ ++ + W+v+l ++ ++++++t+GW++F + +g+k g+++++k++g++ f ++k+ GRMZM2G109879_P01 145 SNLSEK-MMLPARFVKDYvSEECLNSRIAIIFSPIAKFWRVEL--KNDQSGIFFTGGWSQFLDFHGIKNGEVLLLKYEGNMVF--KFKA 228 455554.9**********855556777888889**********..999999****************************9999..5554 PP | |||||||
3 | B3 | 55.3 | 1.2e-17 | 301 | 384 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++k+ ++ ++l++ l l+ kf++++g ++++tl+ + s rsW+v+ + k ry+++ GWk+F+++n+Lk+gD ++F ++ GRMZM2G109879_P01 301 WIKKRINTYALEQF-LALSVKFCNSIGFRMACTITLKTATNSTRSWQVRGT-AYKWHRYIIGVGWKSFCQDNRLKAGDLCTFNIIE 384 68999999999998.***********99999*99999999999*******3.344456************************9765 PP | |||||||
4 | B3 | 52.4 | 9.5e-17 | 462 | 540 | 6 | 86 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +++++ + +rl+l f++++++ +++ ++l++ s+ sW+v ++k+g+y+++ GWk+F+ +n++k+gD+++F +++ GRMZM2G109879_P01 462 MNASTIR-NRLCLAPAFCNQIELRRRCE--IVLKTsiNSNHSWRVGG-LSQKKGSYIIGPGWKKFCTENRVKVGDVCTFNVIE 540 3455554.67************998885..6666644788******9.6888889************************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.08E-14 | 18 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-13 | 18 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.5E-6 | 18 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.92E-10 | 18 | 110 | No hit | No description |
Pfam | PF02362 | 5.8E-10 | 30 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.968 | 59 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.448 | 136 | 232 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.25E-11 | 137 | 229 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-15 | 139 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.2E-13 | 139 | 232 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.16E-16 | 140 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-10 | 144 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.702 | 300 | 396 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-16 | 300 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-18 | 302 | 395 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.2E-13 | 302 | 384 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-5 | 302 | 396 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.75E-10 | 314 | 380 | No hit | No description |
SuperFamily | SSF101936 | 1.94E-15 | 455 | 550 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-17 | 456 | 550 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0012 | 458 | 552 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.33E-9 | 458 | 536 | No hit | No description |
Pfam | PF02362 | 5.1E-13 | 464 | 546 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.405 | 488 | 552 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MPLPSDSGSG ARAMSKQFKV LLPTSFHKLR ISDELAGCFD AGEGEGAPEP TALVVSPFGK 60 VWRVEVVRDG HGASLGRGWA EFLAAHGVGI GWFVVLRYEG GGALTVKVFD TSLCIKEFGA 120 PAAVMPSKSC KSIFCKPQFI RIFHSNLSEK MMLPARFVKD YVSEECLNSR IAIIFSPIAK 180 FWRVELKNDQ SGIFFTGGWS QFLDFHGIKN GEVLLLKYEG NMVFKFKAFG LSGCQKDFKN 240 QNAGIQLNTK KQQETPPIRK RKSNDEKSSS EENKRLKTPV TSPSPSDPSL EKPYQIGTSS 300 WIKKRINTYA LEQFLALSVK FCNSIGFRMA CTITLKTATN STRSWQVRGT AYKWHRYIIG 360 VGWKSFCQDN RLKAGDLCTF NIIETTLWHV TITRSALAAD TFNKQKKPPC SSSRDKKGSS 420 SREGAKRPKP SMAHFSKVQV PPSYARRCAY DVGPPPWIRK QMNASTIRNR LCLAPAFCNQ 480 IELRRRCEIV LKTSINSNHS WRVGGLSQKK GSYIIGPGWK KFCTENRVKV GDVCTFNVIE 540 TQLWHVVITR RC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26595 | 0.0 | ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G109879 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G109879_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943383 | 0.0 | EU943383.1 Zea mays clone 1616277 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008669670.1 | 0.0 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A060D1G2 | 0.0 | A0A060D1G2_MAIZE; ABI3VP1 transcription factor (Fragment) | ||||
STRING | GRMZM2G109879_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G109879_P01 |
Entrez Gene | 103646788 |