PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109869_P02
Common NameZm.19572
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 429aa    MW: 44803.2 Da    PI: 11.2854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109869_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS35.41.5e-11255339291
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                        ++lL e+A a+++g++e+a a La l+  a+++gd+ qRl+a+++ AL++r+a      +++ p++  ++  s+e+ a  +l++++sP+ 
  GRMZM2G109869_P02 255 RQLLSEAAVAIADGHHEAAAAHLAALKRAANQHGDAEQRLIAMMVAALSSRIAP-----AASAPSQLLADLCSVEQRAGSQLLQDLSPCW 339
                        689**************************************************9.....4445555555555777778889999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.3E-9255339IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEPGAPWRDP RQGYSYGVGS AMQLQLQLQQ RADAAAGGGV LKRSLGELER WQHHQQQQVA  60
AQQALYLRAV RQRTAAAVDI AALLGGTPAQ PLVLPGSSFG GGLASPSSTL SSSLTTASRA  120
AVPLMQPQLQ RQVPLTTSSP QTQPFGLSTA PLPQPSVSSE LFILQELEKQ LLDDDDDDEP  180
VAAMSGTGSA VTNSEWEETI QQLSSIAAAP SPGLPAAATP NNNNNNVGMT RSPSNSSTAS  240
SSASCSPPTP GAASRQLLSE AAVAIADGHH EAAAAHLAAL KRAANQHGDA EQRLIAMMVA  300
ALSSRIAPAA SAPSQLLADL CSVEQRAGSQ LLQDLSPCWR GRLRRRPGPR RPCRRRRRTR  360
SAGMAPTGWS GARSSASGAP GSAWRASARC RSARALPKSW SAPASAMYRP GSQSRRRTAC  420
SGSVGWGAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343357RRRPGPRRPCRRRRR
2349356RRPCRRRR
3353358RRRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.195720.0ear| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109869
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109869_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9732450.0EU973245.1 Zea mays clone 395390 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668998.10.0scarecrow-like protein 8
TrEMBLA0A060CY610.0A0A060CY61_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G109869_P010.0(Zea mays)