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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GRMZM2G109869_P01 |
| Common Name | GRAS52, LOC103646038, Zm.19572 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
GRAS |
| Protein Properties |
Length: 623aa MW: 65571 Da PI: 6.5741 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G109869_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 300.7 | 3.6e-92 | 255 | 623 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
++lL e+A a+++g++e+a a La l+ a+++gd+ qRl+a+++ AL++r+a +++ p++ ++ s+e+ a +l++++sP++++
GRMZM2G109869_P01 255 RQLLSEAAVAIADGHHEAAAAHLAALKRAANQHGDAEQRLIAMMVAALSSRIAP-----AASAPSQLLADLCSVEQRAGSQLLQDLSPCFRV 341
689***************************************************.....4455555555555888888889*********** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181
+ +a aI+eav ++++H +Dfd+s + Q +aL+q La+R+ + sl++T+v +p+s + +l +++erL+k+Ae+ gv+ +f+v
GRMZM2G109869_P01 342 ALHAASAAIVEAVGDHRAIHLVDFDVSFP-QHAALIQYLADRRVQGRSLKVTAVTDPSSPftqsLTASLPAIEERLKKLAERAGVEYRFTV- 431
****************************8.99************************99888877788999********************9. PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
v+ r ++l+ ++L ++pgEa+aVnl+++l +++desvs +++rde+L+ v+ l P+vv++veqe+++n++++++rf++a+ +y a+++sl+a
GRMZM2G109869_P01 432 VSCRAAELDASRLCCEPGEAVAVNLAFALSHVPDESVSPANPRDELLRRVRALGPQVVTLVEQELNTNTAPLAARFTDACAHYGAILESLDA 523
7999**************************************************************************************** PP
GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq.aklllrkvksdgyrveeesgslvlgWkd 364
+l+re e++ E++ l++++ n+v g +r er+e ++kWr+r+++aGF+pv+l++++a++ + + + +v+ g++v+ e+g l ++W++
GRMZM2G109869_P01 524 TLAREIAEKARAEAA-LSKKAANAVGRDGPDRLERCEVFGKWRARFGMAGFRPVSLGSSIAEElVGARVGHVP-PGFTVKAENGVLRFCWMG 613
**************9.****************************************99988772456666666.9***************** PP
GRAS 365 rpLvsvSaWr 374
r+++++SaWr
GRMZM2G109869_P01 614 RAVTVASAWR 623
*********8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 623 aa
Download sequence Send
to blast |
MEPGAPWRDP RQGYSYGVGS AMQLQLQLQQ RADAAAGGGV LKRSLGELER WQHHQQQQVA 60
AQQALYLRAV RQRTAAAVDI AALLGGTPAQ PLVLPGSSFG GGLASPSSTL SSSLTTASRA 120
AVPLMQPQLQ RQVPLTTSSP QTQPFGLSTA PLPQPSVSSE LFILQELEKQ LLDDDDDDEP 180
VAAMSGTGSA VTNSEWEETI QQLSSIAAAP SPGLPAAATP NNNNNNVGMT RSPSNSSTAS 240
SSASCSPPTP GAASRQLLSE AAVAIADGHH EAAAAHLAAL KRAANQHGDA EQRLIAMMVA 300
ALSSRIAPAA SAPSQLLADL CSVEQRAGSQ LLQDLSPCFR VALHAASAAI VEAVGDHRAI 360
HLVDFDVSFP QHAALIQYLA DRRVQGRSLK VTAVTDPSSP FTQSLTASLP AIEERLKKLA 420
ERAGVEYRFT VVSCRAAELD ASRLCCEPGE AVAVNLAFAL SHVPDESVSP ANPRDELLRR 480
VRALGPQVVT LVEQELNTNT APLAARFTDA CAHYGAILES LDATLAREIA EKARAEAALS 540
KKAANAVGRD GPDRLERCEV FGKWRARFGM AGFRPVSLGS SIAEELVGAR VGHVPPGFTV 600
KAENGVLRFC WMGRAVTVAS AWR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727975 | 0.0 | KJ727975.1 Zea mays clone pUT6089 GRAS transcription factor (GRAS52) mRNA, partial cds. |
