PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109627_P01
Common NameNAC118, ZEAMMB73_792077, Zm.131513
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 398aa    MW: 42481.4 Da    PI: 6.6486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109627_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-51271621128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+v+yL+k++++ ++++  vi+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++
  GRMZM2G109627_P01  27 LPPGFRFHPTDEELIVHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAVFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKPI 117
                        79***************************9.89***************87778999************************************ PP

                NAM  93 lsk..kgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                        + +  +            +g+kk Lvfy+gr pkg+kt+W+mheyrl
  GRMZM2G109627_P01 118 TLSssS--SssaaaaagmIGVKKALVFYRGRPPKGVKTSWIMHEYRL 162
                        *98551..3456677777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6124199IPR003441NAC domain
PROSITE profilePS5100559.31527199IPR003441NAC domain
PfamPF023659.2E-2728162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0020127anatomyprimary root
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMTVDLGLQA APPPSSSGGV PSSCTALPPG FRFHPTDEEL IVHYLRKRAA AAPCPAPVIA  60
EVDIYKFDPW DLPAKAVFGE AEWYFFSPRD RKYPNGVRPN RAAGSGYWKA TGTDKPITLS  120
SSSSSSAAAA AGMIGVKKAL VFYRGRPPKG VKTSWIMHEY RLAEALHAVV NAYRPTRFKN  180
NASSSMRLDD WVLCRIYKKT TPQLAYSMSP PPHEEVEASS TSFMDGGGGF DLSRLHPADD  240
SASVSADDDI MALAAAAATS YYAARPLPRP ASISDYLLDY SAVSELFEAT PLTETTAQPG  300
TATDAAGGFY YDFGNGGGEP AAAASVVAQQ HQLSPLKRRS SVDEDNCNGG ITDMLHASSS  360
SSSKRVMGDH HSSSSSMAAN SSVFEPGQTS SHQLHDRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-702120114170NAC domain-containing protein 19
3swm_B4e-702120114170NAC domain-containing protein 19
3swm_C4e-702120114170NAC domain-containing protein 19
3swm_D4e-702120114170NAC domain-containing protein 19
3swp_A4e-702120114170NAC domain-containing protein 19
3swp_B4e-702120114170NAC domain-containing protein 19
3swp_C4e-702120114170NAC domain-containing protein 19
3swp_D4e-702120114170NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109627
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109627_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554200.0EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655528.10.0NAC transcription factor NAM-B2
TrEMBLK7VP750.0K7VP75_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G109627_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.16e-80NAC domain containing protein 47