PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109605_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 215aa    MW: 23939.4 Da    PI: 12.0747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109605_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-084085654
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +rEr RR+r+ ++f+ L  llP+     s K  K +i+  A  Y+++L
  GRMZM2G109605_P01 40 IMRERLRRERLSQGFADLHALLPHG---ASSKGGKNDIVGAAAGYVREL 85
                       58**********************6...699999999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3443485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1236104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-54085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-54091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-941102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTPAPPWWRP QRSRRPRARA FPASGLARRR RREARGFRNI MRERLRRERL SQGFADLHAL  60
LPHGASSKGG KNDIVGAAAG YVRELVARKE QLSARNQELL EKAASRWKQQ GGTRSGVGRG  120
MVVKVQAESQ DHSMALGAFV RVLQRLKAME AGLQVTAIRT RFSAGGVWMN IGVEGQVSAR  180
DVDKSITNAL IELEGNDPRS SKPRFSCQVE TVQMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.675340.0endosperm| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109605
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109605_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488630.0EU948863.1 Zea mays clone 388069 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657188.11e-117transcription factor BHLH148
TrEMBLK7VC471e-116K7VC47_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G109605_P011e-154(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432
Representative plantOGRP1534134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-06bHLH family protein