PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G109509_P01

Common Name

Zm.24436

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Nin-like

Protein Properties

Length: 953aa MW: 106232 Da PI: 5.7934

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G109509_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.5e-28	627	677	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ GRMZM2G109509_P01 627 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 677 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	616	697	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-26	629	677	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.9E-23	845	930	No hit	No description
SuperFamily	SSF54277	1.3E-21	846	930	No hit	No description
SMART	SM00666	1.4E-22	848	931	IPR000270	PB1 domain
PROSITE profile	PS51745	20.317	848	931	IPR000270	PB1 domain
Pfam	PF00564	6.0E-16	849	930	IPR000270	PB1 domain
CDD	cd06407	3.63E-38	849	929	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence Send to blast
MEQAPQTHGG GGLLACGVME DVAVGDLDLM EELFMAAPGF DFSDFSQPGA GGESPGVCFS 60 PLFDICSTTT TATPPPPPPS GDDNRDQPTP PRRGWVFQPR LEVDATVKER LRRALERIAS 120 LSQTQPGELL AQVWVPTVIG DRQVLTTCGQ PFWLDCRNER LANYRTVSMK YQFSADETAR 180 TDLGMPGRVF VGRVPEWTPD VRYFSTEEYP RVHHAQYFDI RGSVALPIFE PRSRVCLGVV 240 ELVMTTEKVN YNAEIQNICS ALKLCRLLCR YTLNLFDEMP LGKDVITTGH ANPRSNQSFH 300 LTLFGDVLVS VTDTSYRAII PEIVDVLRTV CETHKLPLAQ TWIPCICQAK RGSRHTDEKL 360 KYCVSTLDEA CYVRDLNVNG FHEACSEHHL FRGEGVVGRA FATNEPCFSE DITASSKIQY 420 PLSHHAKLFS LRAAVAIRLR SISTGSLDYV LEFFLPVDCI EIEEQRAMLN SLSITIQQTC 480 YTLRVVSLKE LVDEGSIETS ALTPPEYDKS MHENIDEVCS GIGVPARTAS LETSEEVSSW 540 IASLVCAQNK GVKEMDGDLP FGFSKQEDEG FSVTAGWHTS PVIEPEGSIF SGFKQHEEYK 600 VKEVTCLRDP SSSNLEKTVE KRRTKMEKTV SLEELRKHFA GSLKEAAKNL GVCPTTLKRI 660 CRQHGINRWP SRKIKKVGHS LKKLQMVIDS VHGSEGTVQL SSLYENFTKT TWSERELQGD 720 ATYPLSEEKG PLEPSVPDRY CEGRFTSHTS GSNSLSPSCS QSSNSSHGCS SGSKSQQHVS 780 APQLAVKKEV FMEENQSSTL LKAASHAELQ MLPEERLVTL PRSHSQVLLS EQKPVENITG 840 MQMSKPDSLK IKAMYGEERC IFRLQPSWGF EKLKEEILKR FGIAREVYVD LKYLDDESEW 900 VLLTCNADLL ECIDVYKSSS TQTVRILVHS SDQIGEKVIV GVPCQLLGLV CMQ

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence Send to blast

MEQAPQTHGG GGLLACGVME DVAVGDLDLM EELFMAAPGF DFSDFSQPGA GGESPGVCFS  60
PLFDICSTTT TATPPPPPPS GDDNRDQPTP PRRGWVFQPR LEVDATVKER LRRALERIAS  120
LSQTQPGELL AQVWVPTVIG DRQVLTTCGQ PFWLDCRNER LANYRTVSMK YQFSADETAR  180
TDLGMPGRVF VGRVPEWTPD VRYFSTEEYP RVHHAQYFDI RGSVALPIFE PRSRVCLGVV  240
ELVMTTEKVN YNAEIQNICS ALKLCRLLCR YTLNLFDEMP LGKDVITTGH ANPRSNQSFH  300
LTLFGDVLVS VTDTSYRAII PEIVDVLRTV CETHKLPLAQ TWIPCICQAK RGSRHTDEKL  360
KYCVSTLDEA CYVRDLNVNG FHEACSEHHL FRGEGVVGRA FATNEPCFSE DITASSKIQY  420
PLSHHAKLFS LRAAVAIRLR SISTGSLDYV LEFFLPVDCI EIEEQRAMLN SLSITIQQTC  480
YTLRVVSLKE LVDEGSIETS ALTPPEYDKS MHENIDEVCS GIGVPARTAS LETSEEVSSW  540
IASLVCAQNK GVKEMDGDLP FGFSKQEDEG FSVTAGWHTS PVIEPEGSIF SGFKQHEEYK  600
VKEVTCLRDP SSSNLEKTVE KRRTKMEKTV SLEELRKHFA GSLKEAAKNL GVCPTTLKRI  660
CRQHGINRWP SRKIKKVGHS LKKLQMVIDS VHGSEGTVQL SSLYENFTKT TWSERELQGD  720
ATYPLSEEKG PLEPSVPDRY CEGRFTSHTS GSNSLSPSCS QSSNSSHGCS SGSKSQQHVS  780
APQLAVKKEV FMEENQSSTL LKAASHAELQ MLPEERLVTL PRSHSQVLLS EQKPVENITG  840
MQMSKPDSLK IKAMYGEERC IFRLQPSWGF EKLKEEILKR FGIAREVYVD LKYLDDESEW  900
VLLTCNADLL ECIDVYKSSS TQTVRILVHS SDQIGEKVIV GVPCQLLGLV CMQ

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G109509

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G109509_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001337202.1	0.0	uncharacterized protein LOC100278991
Refseq	NP_001337203.1	0.0	uncharacterized protein LOC100278991
Refseq	XP_023157659.1	0.0	uncharacterized protein LOC100278991 isoform X2
Refseq	XP_023157660.1	0.0	uncharacterized protein LOC100278991 isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A1D6JMR3	0.0	A0A1D6JMR3_MAIZE; Protein NLP2
TrEMBL	A0A317YCC0	0.0	A0A317YCC0_MAIZE; Protein NLP1
STRING	GRMZM2G109509_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G109509_P01

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]