PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G109480_P03 | ||||||||
Common Name | LOC100192994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26142.1 Da PI: 9.9667 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48 | 2.3e-15 | 139 | 224 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k++++s+v + +l lp +f+++++ k ++ t+tl de+ ++++ ++ ++++ l++GW +F+ + +++gD+ vF+l++ ++f+ GRMZM2G109480_P03 139 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDATITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFALYHAIQDGDSTVFQLIKPTTFKV 224 89************************844..788****************..555555..9***********************99777744 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-17 | 130 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-20 | 132 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.36E-21 | 137 | 225 | No hit | No description |
PROSITE profile | PS50863 | 10.405 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-13 | 139 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-13 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MEAAVAETQG MSPYEAARER NLQENKRKME ALNLRHLSAV IKEAPKTPSP MKPKRRRIIE 60 DAVVVPSPPR RSRRLANVPE VKYAEIAPHR ADRMTRSPRR PADLIYLARR GSISMKARLE 120 ATRKAEELES QLDPEIPSFV KAMLHSHVVR GFWLGLPSHF CDTYMPKQDA TITLVDEKDE 180 EFDTNYLAYK KGLSGGWAGF ALYHAIQDGD STVFQLIKPT TFKVLHAFSE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 53 | 57 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.18375 | 0.0 | cell lignification| ear| embryo| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G109480 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G109480_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT087300 | 0.0 | BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345448.1 | 1e-166 | B3 domain-containing protein | ||||
Swissprot | Q10QS9 | 1e-129 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | C4J903 | 1e-165 | C4J903_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G028794_P01 | 1e-144 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-47 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G109480_P03 |
Publications ? help Back to Top | |||
---|---|---|---|
|