PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109354_P01
Common NameZEAMMB73_243871, Zm.32258
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 850aa    MW: 94022.9 Da    PI: 5.3849
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109354_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.93.9e-35172246276
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                        Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  GRMZM2G109354_P01 172 CQVPGCEADIRELKGYHRRHRVCLRCAHAATVMLDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 246
                        ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114129.504169246IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.5E-26169233IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-33170249IPR004333Transcription factor, SBP-box
PfamPF031106.2E-27172246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MDAPDSGGGG SADAGEPIWD WGNLLDFVVQ DDDSLILPWD DAAGIAASDP TEAATALLPA  60
SPPLPQSVEE EPEPEPEPGP VLPPPPLRVQ GIGRRVRKRD PRLVCPNYLA GIVPCACPEV  120
DEMVAAAEVE DVATEFLAGA RKKTKTAGRR GKAEAAGTAG GTVRAAVAEM KCQVPGCEAD  180
IRELKGYHRR HRVCLRCAHA ATVMLDGVQK RYCQQCGKFH VLLDFDEDKR SCRRKLERHN  240
KRRRRKPDSK GTLDKEIDEP LDMPADVSGS DELREENMEG ITSEILETVL SNKVMDRETP  300
VGSEDVLSSP TCTQPCLQND QSKSVVTFAA SVEACIGAKQ ESIKLANSPM HDTKSAYSSS  360
CPTGRISFKL YDWNPAEFPR RLRHQIFEWL GSMPVELEGY IRPGCIILTV FIAMPQHMWD  420
KLSDDAADLL RNLVNSPNSL LLGKGAFFIH VNNMLFQVLK DETTLMSTRL DIQAPRIDYV  480
HPTWFEAGKP VNLILYGSSL DQPNFRSLLS FGGDYLKHDC YRLPSHDTFD GFESGDFIPD  540
SQHEIFRIHI TQSRPDIYGP AFVEVENMFG LSNFVPILFG SKQLCSELER IHDALCGSYS  600
ENNVLGELLS ASSDPHEHRK LCSSVMSGFL IDIGWLIRKP TPDEFKSVLS STNIQRWICM  660
LKFLIQNDFI NVLEIIVKSM DSIMGSEVLS NLERGRLEDH VTAFLGYVSH ARNIADRRAN  720
HDEKTQIETR GIIVTSPNQP NLGASVPFAS ENTDFGGDNK LNSTDEEEIM PLVTRDVSHR  780
HCCQPDTTVR WLKPSLIVTY PGGATRMRLV TTVAVAAVLC FTACLVLFHP HGVGVLAAPV  840
KRYLSSDSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A8e-41171251585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228246KRSCRRKLERHNKRRRRKP
2232244RRKLERHNKRRRR
3239246NKRRRRKP
4240245KRRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.322581e-167endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109354
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109354_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656292.20.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A1D6FQB10.0A0A1D6FQB1_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRINGGRMZM2G109354_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Representative plantOGRP48281320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-137squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]