PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G108933_P01 | ||||||||
Common Name | HB94, LOC103651027, wox2A, Zm.99579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 324aa MW: 34810.7 Da PI: 9.3962 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 40 | 99 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++tkeq+ +Le l+e r+psae++++++ +l ++ ++V++WFqN++a++++ GRMZM2G108933_P01 40 ARWNPTKEQVAVLEGLYEHgLRTPSAEQIQQITGRLrehgAIEGKNVFYWFQNHKARQRQ 99 7*****************99**************************************96 PP | |||||||
2 | Wus_type_Homeobox | 110.6 | 8.5e-36 | 39 | 101 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Pt+eQ+ +Le ly++GlrtP++e+iq+it +L+e+G+ie+kNVfyWFQN+kaR+rq+q GRMZM2G108933_P01 39 NARWNPTKEQVAVLEGLYEHGLRTPSAEQIQQITGRLREHGAIEGKNVFYWFQNHKARQRQRQ 101 78***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.349 | 35 | 100 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-5 | 37 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 40 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.02E-12 | 40 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.7E-17 | 40 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.32E-5 | 41 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
METPQQQSAA AAAAAAHGQD DGGSPPMSPA SAAAAALANA RWNPTKEQVA VLEGLYEHGL 60 RTPSAEQIQQ ITGRLREHGA IEGKNVFYWF QNHKARQRQR QKQDSFAYFS RLLRRPPPLP 120 VLSMPPAPPY HHARVPAPPA IPMPMAPPPP AACNDNGGAR VIYRNPFYVA APQAPPANAA 180 YYYPQPQQQQ QQQVTVMYQY PRMEVAGQDK MMTRAAAHQQ QQHNGAGQQP GRAGHPSRET 240 LQLFPLQPTF VLRHDKGRAA NGSNNDSLTS TSTATATATA TATASASISE DSDGLESGSS 300 GKGVEEAPAL PFYDFFGLQS SGGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.99579 | 0.0 | endosperm| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G108933 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G108933_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490235 | 0.0 | AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene). | |||
GenBank | BT037009 | 0.0 | BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds. | |||
GenBank | EU954062 | 0.0 | EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306689.1 | 0.0 | WUSCHEL-related homeobox 5 | ||||
Swissprot | A2WWU7 | 1e-47 | WOX5_ORYSI; WUSCHEL-related homeobox 5 | ||||
Swissprot | Q8LR86 | 1e-47 | WOX5_ORYSJ; WUSCHEL-related homeobox 5 | ||||
TrEMBL | A8Y7V6 | 0.0 | A8Y7V6_MAIZE; HB transcription factor | ||||
STRING | GRMZM2G108933_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 | Representative plant | OGRP8582 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 6e-34 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G108933_P01 |
Entrez Gene | 103651027 |
Publications ? help Back to Top | |||
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