PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G108865_P01 | ||||||||
Common Name | DOF25, Zm.14936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 371aa MW: 38032 Da PI: 9.1322 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.4e-38 | 78 | 135 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + GRMZM2G108865_P01 78 QTPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 135 66789**************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.3E-31 | 80 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 81 | 135 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-27 | 81 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 83 | 119 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MIQELLGGAA MDQLKSVNES LPLLLHSVIS NPSPTSSSST SSRSSAQQHQ QQRSTSATSS 60 PQAGQQQQQQ GQGQGAEQTP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA 120 LRNVPIGGGC RKPRPMPTPV TKPAVSCKAV GGAQSLGLGV GLGMGAGPGP WASSQQAAAA 180 QLMALLNSAR SVQGGGGGNM HRLLGLDAVA HLPLHVLPGA GNNAGGTAPS FWPQAAPRVI 240 PAPPHMDSQL GMGPLGQHDV LSSLGLKLPP PSPSPAASYY SDQLHAVVSS AAGRGHEYET 300 AACATSLPCT TALTSLPPAA SSVSAALASA ATVGLDLPLV SLSAPEMQYW AGPAAMSVAW 360 PDLPTPNGAF P |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.14936 | 0.0 | ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G108865 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G108865_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726976 | 0.0 | KJ726976.1 Zea mays clone pUT3677 C2C2-DOF transcription factor (DOF25) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144626.2 | 0.0 | uncharacterized protein LOC100277644 | ||||
TrEMBL | A0A060CZ34 | 0.0 | A0A060CZ34_MAIZE; C2C2-DOF transcription factor (Fragment) | ||||
STRING | GRMZM2G108865_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7710 | 31 | 44 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07640.1 | 1e-31 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G108865_P01 |