PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G107886_P01
Common NameLOC100283083, ZEAMMB73_743902
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 456aa    MW: 49286.7 Da    PI: 4.851
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G107886_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.18.4e-092062238
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       e+r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  GRMZM2G107886_P01 20 EARACDACLRRRARWYCAADDAFLCQVCDTSVHSAnslarrHE 62
                       6789*****************************6566777776 PP
2CCT67.73.2e-23401444144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  GRMZM2G107886_P01 401 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 444
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.2E-121966IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0071966IPR000315B-box-type zinc finger
PfamPF006439.6E-82063IPR000315B-box-type zinc finger
CDDcd000213.36E-102266No hitNo description
PROSITE profilePS5101716.083401443IPR010402CCT domain
PfamPF062037.8E-18401443IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MIATTTTGSS AKAAAVGGKE ARACDACLRR RARWYCAADD AFLCQVCDTS VHSANSLARR  60
HERLRLRPTS PLQTPPPPTP ASANRESHDE VVPAWFKRKA RTPRGGRAKS DVRTLSRRLV  120
VPHAAGGDSP DGRNDEGEFE AEEPEEEVLY RVPVFDPALA EFCSPQPLED AAALASSCNE  180
DGAVEDPAKT DRETPAAAPL VQFFPDGGHA NFGPTDAELR EFAADMEALL GYGLDDGNEE  240
SSSFCMETLG LLEPVEVGED ASRVKVETDA GSACEASGTL ACALELLDPD ASDEMLDIDF  300
NYGSPQDTTT TENAASSSHT GTDGQFLQTS LSLTLNYEAI IQSWGSSPWT GGAERPHVKL  360
DDSWPHDCTN MWVVGRGMVG HGGEDLLGTP RLGQGMDDVG REARVSRYRE KRRTRLFSKK  420
IRYEVRKLNA EKRPRMKGRF VKRATAGGSL TIAGLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411427RRTRLFSKKIRYEVRKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G107886
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G107886_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9633960.0EU963396.1 Zea mays clone 261863 zinc finger protein CONSTANS-LIKE 16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149457.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLK7VBR10.0K7VBR1_MAIZE; Zinc finger protein CONSTANS-LIKE 16
STRINGGRMZM2G107886_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-61B-box type zinc finger protein with CCT domain