PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G107672_P01
Common NameLOC103646593, LOC103647221
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 358aa    MW: 38383.7 Da    PI: 6.0221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G107672_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.8e-10156200655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  GRMZM2G107672_P01 156 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKNLQ 200
                        568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.98E-13147201No hitNo description
SuperFamilySSF474591.44E-15147217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.129150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-16152216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7156200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDMEHQLLHL ERFMASSPGF FTVDSGQDPA HFPNGGLFVE QVGATGGVGG DDGGWVEDLM  60
QLGEELFGGR GDANGTDDGM GDDHYYQQWQ CDDGGSPDGG PPPSVSLDGD ASPPSGEQEQ  120
GTVELASERH PHREAEDGDD DVLGATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI  180
TKMDKASIIA DAVVYVKNLQ AHARKLKEEV AALEARPRSP TGQHSGPAGA GRRRHQQQQQ  240
ERRRDAGRSA GSGARVTHVG AVQVGEGRFF VTVECERRDG VAAPLCAAAE SLACFRVETS  300
SVGGRSGPDR VVSMSTLTLK GRGQLGDAAA IGEASVKLWM MAALVKEGFR PAATVQIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147162KRRDRSKTIVSERKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G107672
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G107672_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269721e-101KJ726972.1 Zea mays clone pUT3673 bHLH transcription factor (bHLH100) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670013.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A096SYH20.0A0A096SYH2_MAIZE; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A3L6FTQ60.0A0A3L6FTQ6_MAIZE; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
STRINGGRMZM2G107672_P010.0(Zea mays)
STRINGGRMZM2G173521_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Representative plantOGRP72711118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-33FER-like regulator of iron uptake