PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106673_P04
Common NameABI14, IDP386, ZEAMMB73_261802
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 171aa    MW: 19819.5 Da    PI: 6.5385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106673_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-1573162198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +t+s+v+   +l lp +f++++  +k ++ ++tl de+  + +  +   k++    l++GW++F+ +++L +gD +vF+l+++++f  
  GRMZM2G106673_P04  73 FIKPMTQSHVTGGFWLGLPIHFCRKYL-PK-RDEMITLVDEDDDESDTLYLAMKRG----LSAGWRGFAVQQKLVDGDCLVFQLIEQTKF-- 156
                        89************************5.33.5569********9999999444444....9***********************987777.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v + r
  GRMZM2G106673_P04 157 KVYITR 162
                        777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1965164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2366164IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-2371162No hitNo description
PfamPF023621.4E-1373163IPR003340B3 DNA binding domain
PROSITE profilePS5086310.81473164IPR003340B3 DNA binding domain
SMARTSM010194.1E-1773164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEPVRRSGRL ANLPDKPVYR EKVPDFGMKI RRTYGSVRRD LTNRVYATDD ARSYAISKAE  60
DLEQELDSSF PIFIKPMTQS HVTGGFWLGL PIHFCRKYLP KRDEMITLVD EDDDESDTLY  120
LAMKRGLSAG WRGFAVQQKL VDGDCLVFQL IEQTKFKVYI TRASSYYESE D
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.729640.0aerial organ| cell culture| embryo| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106673
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106673_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0374440.0BT037444.1 Zea mays full-length cDNA clone ZM_BFb0169I10 mRNA, complete cds.
GenBankBT0647750.0BT064775.1 Zea mays full-length cDNA clone ZM_BFb0126B04 mRNA, complete cds.
GenBankBT0654760.0BT065476.2 Zea mays full-length cDNA clone ZM_BFb0176M17 mRNA, complete cds.
GenBankEU9595540.0EU959554.1 Zea mays clone 218541 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136712.11e-126uncharacterized LOC100216848
RefseqXP_008676667.11e-126uncharacterized protein LOC100216848 isoform X1
SwissprotQ69V367e-92Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLB4FK061e-125B4FK06_MAIZE; ABI3VP1 transcription factor
STRINGGRMZM2G106673_P021e-126(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-58B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]