PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G106673_P01

Common Name

ABI14, IDP386, ZEAMMB73_261802

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Protein Properties

Length: 171aa MW: 19819.5 Da PI: 6.5385

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G106673_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.4	1.7e-15	73	162	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +t+s+v+ +l lp +f++++ +k ++ ++tl de+ + + + k++ l++GW++F+ +++L +gD +vF+l+++++f GRMZM2G106673_P01 73 FIKPMTQSHVTGGFWLGLPIHFCRKYL-PK-RDEMITLVDEDDDESDTLYLAMKRG----LSAGWRGFAVQQKLVDGDCLVFQLIEQTKF-- 156 89**********************5.33.5569****9999999444444....9*********************987777.. PP EEEEE- CS B3 93 vvkvfr 98 +v + r GRMZM2G106673_P01 157 KVYITR 162 777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-19	65	164	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-23	66	164	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.22E-23	71	162	No hit	No description
Pfam	PF02362	1.4E-13	73	163	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.814	73	164	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-17	73	164	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEPVRRSGRL ANLPDKPVYR EKVPDFGMKI RRTYGSVRRD LTNRVYATDD ARSYAISKAE 60 DLEQELDSSF PIFIKPMTQS HVTGGFWLGL PIHFCRKYLP KRDEMITLVD EDDDESDTLY 120 LAMKRGLSAG WRGFAVQQKL VDGDCLVFQL IEQTKFKVYI TRASSYYESE D

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.72964	0.0	aerial organ\| cell culture\| embryo\| meristem\| ovary\| pericarp\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G106673

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G106673_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037444	0.0	BT037444.1 Zea mays full-length cDNA clone ZM_BFb0169I10 mRNA, complete cds.
GenBank	BT064775	0.0	BT064775.1 Zea mays full-length cDNA clone ZM_BFb0126B04 mRNA, complete cds.
GenBank	BT065476	0.0	BT065476.2 Zea mays full-length cDNA clone ZM_BFb0176M17 mRNA, complete cds.
GenBank	EU959554	0.0	EU959554.1 Zea mays clone 218541 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136712.1	1e-126	uncharacterized LOC100216848
Refseq	XP_008676667.1	1e-126	uncharacterized protein LOC100216848 isoform X1
Swissprot	Q69V36	7e-92	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	B4FK06	1e-125	B4FK06_MAIZE; ABI3VP1 transcription factor
STRING	GRMZM2G106673_P02	1e-126	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-58	B3 family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G106673_P01
Entrez Gene	100216848

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]