PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106653_P01
Common NameZm.145630
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 805aa    MW: 91773.4 Da    PI: 8.9773
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106653_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.54e-1753136190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY++YA++vGF v++++s+ s r+g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +++   l+HnH+++
  GRMZM2G106653_P01  53 RFYRRYARRVGFGVSVRRSSFS-REGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKVRVKLWGDKLLHIELAILDHNHPVS 136
                        5*****************9999.6777****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1553137IPR004330FAR1 DNA binding domain
PfamPF105511.4E-28256349IPR018289MULE transposase domain
PROSITE profilePS509668.902543579IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-4549572IPR007527Zinc finger, SWIM-type
SMARTSM005750.001554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MEVEEPLPTS KNPRRARRRD LNALDPTLEE SDGEDIGVPE VGMVFNNHTE VNRFYRRYAR  60
RVGFGVSVRR SSFSREGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA KVRVKLWGDK  120
LLHIELAILD HNHPVSPAMA RFLNSYKQLS GPAKRRLRMG GPGTMPVEES SKMPMDKLGE  180
LEQLLFGESK HNSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCTRNVF  240
WADARSRAMC EYYSDVITLD TSYVASKYDM PLATFIGVNH HGQSVLMGCA LLSDETAETY  300
SWLLKSWIAC MYGNLPKAIV TDYCRGIQSA VAEIIPGVRH RMCLFQIMRK AAERLGGLSE  360
YRAINKAMHK AVYDSLTIDE FEEEWNTLIT YSGLQSNDWL RSLYECRSSW VPVFIKDTFW  420
AGMSTTQRNE TITPFFDGYV DLKTTLKQFL VKYEMALQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK VYTHNMFKKF QDEIEAIMYC HVSLISVDGP VSTFNVKECI FFEDGKRTMS  540
KIFAVTYKVD EKNISCICGG FQFSGILCRH SLSMLKFQLV REIPQHYILD RWKKDFRQLH  600
VMRRPPSDLV PNNRMDRYDY LSIRCLQLVD SAVLSDKYRL ALRLVRETEK FLLNSNTHDD  660
TQPRIKSRVP KVNKPNIVTG QTMVGAATGN GNDGLKGPEA TAVTQVPQSQ KGGAEKGIVP  720
TGYIGVPANL QQFVGNQTAF RPSIVYMVPL ELGDWEEQRR SQGSMLVGDV RKTSGGVGCV  780
AIRRPRVTLG AKSALFQDID AFLAY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106653
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106653_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645908.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A1D6HCR20.0A0A1D6HCR2_MAIZE; Protein FAR1-RELATED SEQUENCE 6
STRINGGRMZM2G106653_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-138FAR1-related sequence 6