PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106613_P01
Common NameZm.24607
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 1157aa    MW: 126466 Da    PI: 7.3038
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106613_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.72.6e-0576132157
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        +r+R  ++++ ++ +++lF+ +  + ++e +e++  +g+t +qV+ +F  +R + +k
  GRMZM2G106613_P01  76 KRPRDLLNPKAVKCMQSLFALKDILGKKETREISLLCGVTVTQVREFFTVQRSRVRK 132
                        799*************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-476133IPR009057Homeodomain-like
SuperFamilySSF466892.52E-576137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1157 aa     Download sequence    Send to blast
MELVLVKPAA GALVEVGSGS VAGAGSIPAM VAAQQEILHE QVDQLQRLVV AQCRLTGVNP  60
LAQEMAAGAL SIKIGKRPRD LLNPKAVKCM QSLFALKDIL GKKETREISL LCGVTVTQVR  120
EFFTVQRSRV RKFVRLSQEK ALRIETPKEQ DNSYSINTEQ IPPDIEAQAE VIEPLRTLEP  180
VVLQSSLQPT CVPQISSQSM ELQQSDLQHM EVFQNSLQQA EAQHNIAAPI MPSGAMVMQP  240
TDAKISSDSV QKEVKQEGVH SGVASEDKKF LESIFALMQK EETFSGQVKL MEWILQINNV  300
TVLSRFVTMG GLTIMSTWLS QAAIEEQTSV IHVIFKVLLH LPLHKALPVH MSVVLQTINK  360
LRFYRTQDIS SRARNLLSRL SKVLVRIQAL KKPQKDLICK QRISEILRDE SWKSEVDITE  420
EVLALTDGAN ESRKPEPRKT PMLLTASAIE TNKRSSVQTK SKQKRKVLLV EQPNKKATWK  480
NANSVRNTST NNSRPLSADD IQKAKMRAMF MQEKRGKIDI NKLSDKPQAM DTKKAAGLVN  540
SNPSAMPISP HTSAAQPVDP SPSTSKQSTD PQPDNTEISG GLKLNIGSKN NVIEKLDCKR  600
VLWQIPPAVW IDPSWSVGAG DNSKELEVQT QRNRREKETF YTSQKDVPMN PKDPWDLEMD  660
FDDSLTPEVP IDQVPDVDAM ETESVGAAPS AVAPVKDKQI ESASSTSGAV ADDEEANTDY  720
ELLTVLLRNP ELVFALTSNK GENMPNEQTI ALLDTLKQTG LSLSELVNRL GNGAGLPKEP  780
EPEPEPIPAS LPSPTPPDRT SRAVWIPEHA MQVRAAPTLH LPSRGSTPPV ANAVQQGFSN  840
VVSSLPSQPY APPVSVLPAQ IQANAPPSLP LLAVSVNPPV QHVSPVNNLL NRASVHQHGQ  900
QQYALLSDPV ATPLHQQAAG SKPAVAAHPS LPEPNASSHT AFPWQSNAAD MTHAGRNATA  960
DPWAAARAAN SYSTASASTV PSANQNAYGD QGKQGAYSSY GSSAASSRPV VPGHGHDRNG  1020
YSRSALVEYP WDGHHQRHSR SPDPGVVRDY DTDYGGAQGY SQQPLTQWSA GKVQQQGYNP  1080
EPSRQWSSSQ AHQGGYAPAE PSRQWSSSQA HQSYAPELPR QWSSERRGYD DAEPSRTWSS  1140
GQQNPEAPRQ WSRGKQD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1384840.0cell culture| endosperm| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106613
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106613_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1665270.0AF166527.1 Zea mays flowering-time protein isoforms alpha and beta (ZmLD) gene, alternatively spliced products, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674590.10.0homeobox protein LUMINIDEPENDENS isoform X2
TrEMBLA0A1D6N2570.0A0A1D6N257_MAIZE; Luminidependens protein1
STRINGGRMZM2G106613_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Representative plantOGRP41211315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-148HB-other family protein