PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106558_P01
Common NameLOC100191533
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 303aa    MW: 33455.8 Da    PI: 5.1611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106558_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569e-185393547
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +  E++l +d+++qlG++ W++Ia++m+ gRt++++k++w+++
  GRMZM2G106558_P01 53 SDAEEKLVIDLHAQLGNR-WSKIASHMP-GRTDNEIKNHWNTH 93
                       778***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-52644IPR009057Homeodomain-like
PROSITE profilePS500904.173043IPR017877Myb-like domain
SuperFamilySSF466891.8E-2130103IPR009057Homeodomain-like
PROSITE profilePS5129426.9194498IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-244598IPR009057Homeodomain-like
SMARTSM007171.1E-154896IPR001005SANT/Myb domain
CDDcd001673.24E-135394No hitNo description
PfamPF002493.2E-155393IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYVHARSIVA AFVMTREACR ALPCHAGLLR CGKSCRLRWT NYLRPDLKRG LLSDAEEKLV  60
IDLHAQLGNR WSKIASHMPG RTDNEIKNHW NTHIKKKLRK MGIDPLTHKP LPPPDPHPPK  120
DHQSPPHTAT GGSPEAPPSP SPKPPQEKTA VPVMTPASQQ EAGDDDVPLL SNYYPGFCTD  180
EVPMMDPDEI MVPLDDGRTA PPTSTIFSTT TTTSYSAASD SVSSSLSRDE DPLFPLMDLE  240
FPDIAFQMGL LDDMVASWDD SLAQQPLSPS PVYDDDYANQ LQIRSGVAFD QEPGNKIVLF  300
SSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-20309840108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106558
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106558_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336360.0BT033636.1 Zea mays full-length cDNA clone ZM_BFc0115C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354392.11e-162uncharacterized protein LOC100191533
SwissprotQ9C7U72e-58MYB20_ARATH; Transcription factor MYB20
TrEMBLB4F9480.0B4F948_MAIZE; Uncharacterized protein
STRINGGRMZM2G106558_P021e-161(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-53myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]