PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106548_P01
Common NameGRAS54, LOC542138, Zm.18106
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 452aa    MW: 48411.2 Da    PI: 6.4457
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106548_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.82.4e-111724402374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +++ a+++++ +sP++kf
  GRMZM2G106548_P01  72 LSLLLRCAEAVAMDQLTEARELLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRVAVAFQAYNALSPLVKF 163
                        689***************************************************************************************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                        sh+taNqaIl+a++ge+++H+iD+di+qGlQWp L++ LasRp++p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+++  k 
  GRMZM2G106548_P01 164 SHFTANQAILQALDGEDCLHVIDLDIMQGLQWPGLFHILASRPRKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPIEGKI 251
                        ********************************************************....9**************************84444 PP

               GRAS 186 ledleleeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +  +  +L     r + +Ea++V++++  h l+d ++s       +++l++sl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l 
  GRMZM2G106548_P01 252 GHVADAAALlgsrqRRRDDEATVVHWMH--HCLYDVTGSDVG----TVRLLRSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALG 336
                        444455554333224445*********9..889988999998....**********************.899*******************5 PP

               GRAS 273 ak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         +   + +es er  vEr+llg ei+n+va  g +r+ + + +e+W++ l++aGF+pv+l  + a+qa+lll +++++gy++ ee+++l lg
  GRMZM2G106548_P01 337 DGagaAEEESAERYAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWSHELRHAGFRPVSLAGSPAAQARLLLGMYPWKGYTLVEEDACLKLG 427
                        44122344559************************998887.9************************************************* PP

               GRAS 362 WkdrpLvsvSaWr 374
                        Wkd +L+++SaW+
  GRMZM2G106548_P01 428 WKDLSLLTASAWE 440
                        ************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.38245420IPR005202Transcription factor GRAS
PfamPF035148.2E-10972440IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MLQGVLSRAP ATDAAAAMKA KRAGASPGEE EEGDGRSARG KRQQLLGLGP ATALASAAAA  60
EEGPETRGLR LLSLLLRCAE AVAMDQLTEA RELLPEIAEL ASPFGSSPER VAAYFGDALC  120
ARVLSSYLGA YSPLALRPLA AAQSRRVAVA FQAYNALSPL VKFSHFTANQ AILQALDGED  180
CLHVIDLDIM QGLQWPGLFH ILASRPRKPR SLRITGLGAS LDVLEATGRR LADFAASLGL  240
PFEFRPIEGK IGHVADAAAL LGSRQRRRDD EATVVHWMHH CLYDVTGSDV GTVRLLRSLR  300
PKLITIVEQD LGHSGDFLGR FVEALHYYSA LFDALGDGAG AAEEESAERY AVERQLLGAE  360
IRNIVAVGGP KRTGEVRVER WSHELRHAGF RPVSLAGSPA AQARLLLGMY PWKGYTLVEE  420
DACLKLGWKD LSLLTASAWE PADDAAASAP TG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1567744125380Protein SCARECROW
5b3h_A1e-1567744124379Protein SCARECROW
5b3h_D1e-1567744124379Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106548
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106548_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269610.0KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292780.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-172SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A060CZ170.0A0A060CZ17_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G106548_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-150GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]