PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106185_P01
Common NameLOC100285002, Zm.125249
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 378aa    MW: 40665.2 Da    PI: 10.2389
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106185_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.59.4e-112347226
            G2-like  2 prlrWtpeLHerFveaveqLGGsek 26
                       prlrWt+eLH++Fv+av+ LGG++ 
  GRMZM2G106185_P01 23 PRLRWTSELHRNFVRAVDCLGGQDS 47
                       8*********************996 PP
2G2-like49.21.1e-151011312555
            G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +AtPk il+lm+v gLt++hvkSHLQ+YR+
  GRMZM2G106185_P01 101 AEATPKLILQLMDVGGLTIAHVKSHLQMYRS 131
                        68****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-271947IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-10101131IPR006447Myb domain, plants
SuperFamilySSF466891.76E-5102132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27103134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGGAGGGGRN GAATRRYNRS KVPRLRWTSE LHRNFVRAVD CLGGQDSTFC SCLLTSHAKH  60
ACIHTYMSLV WCPLYISLSS SAKMALGSFM CSLRGRCRLH AEATPKLILQ LMDVGGLTIA  120
HVKSHLQMYR SSGQDIRRRE VQPRRLGHLV EHYSFAIDEE GGPKEFVCCP HMKRAEAGPE  180
AAATATATHE SVQGNSDMGA PGTRRCGDDY TRAIPIPMGS SSSRSRRITE GLAWQWQSSG  240
AASAARAATA ASTLRELGFW VRGTEPFKTG RPMANRLSPV ARQLSSKSKE IKCGDDGRFL  300
FGTATRDEAA RRHSPSRRPD SIDPKAVAAV SWSSEGGACA LPPPLSSTGL SARSGPSGSC  360
VFARQRVNLD LSLSICGS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106185
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106185_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620440.0BT062044.1 Zea mays full-length cDNA clone ZM_BFb0208K22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008643794.10.0myb-like DNA-binding domain, SHAQKYF class family protein isoform X1
TrEMBLC0HI880.0C0HI88_MAIZE; Uncharacterized protein
STRINGGRMZM2G106185_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Representative plantOGRP1974722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-10G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]