PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G105641_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Nin-like | ||||||||
Protein Properties | Length: 236aa MW: 27167 Da PI: 8.3247 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85 | 7.1e-27 | 70 | 120 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ke+++e+ls++Fs pik+AA+eL+v++TvLKr+CR++G+ RWP+Rk+ksl GRMZM2G105641_P01 70 KKELTFEQLSRHFSVPIKQAAQELNVGVTVLKRQCRKLGVTRWPYRKLKSL 120 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.996 | 53 | 141 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.1E-23 | 73 | 120 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEMNFFSQDE LGGLFDVDFP SFWAQMEEDE ARRKSEEGDC EKALIVYGNV QTVAEIPGRR 60 GGGSSSGTKK KELTFEQLSR HFSVPIKQAA QELNVGVTVL KRQCRKLGVT RWPYRKLKSL 120 DKLIDNVQGI GKQNAQENGH LTRSLVEFLD QTMKPIGERP DAMLDQRMEG LRLVCFKENV 180 QEDENLTRSV VEFLQLTKKM IEERPDAILD QRTKDLRQAC FKESFRRKRL IGHGAW |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G105641 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G105641_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC190571 | 0.0 | AC190571.5 Zea mays BAC clone CH201-151G9 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008647199.2 | 1e-175 | protein RKD3 | ||||
TrEMBL | A0A1D6HKA6 | 1e-174 | A0A1D6HKA6_MAIZE; Protein RKD3 | ||||
STRING | GRMZM2G105641_P01 | 1e-174 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 3e-27 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G105641_P01 |