PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105348_P01
Common NameZm.96358
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 257aa    MW: 27837 Da    PI: 6.1433
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105348_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.83.6e-33151062102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y++++d++++ ++ w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++l
  GRMZM2G105348_P01  15 FVAKTYRMVDDPATDGVVAWGRDNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHL 97 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l +i r+++
  GRMZM2G105348_P01  98 LGQIVRRSN 106
                        ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.13E-3211104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5211104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-2915104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDSNRSMATS GVAPFVAKTY RMVDDPATDG VVAWGRDNNS FVVADPFAFS QTLLPAHFKH  60
SNFSSFVRQL NTYGFRKVDP DRWEFAHVSF LRGQTHLLGQ IVRRSNGGKR KDDGNGAGSG  120
SADDEDAVAM EVVRLRREQR AIEEQVAAMW RRVQETERRP KQMLAFLVKV AGDPQVLRRL  180
VSGAGGDAVF AAAEPEDGAS IKRARLLLDA GSGGDGAVDF SGLYSTTAGS EDDGVGFGSD  240
YLQPPPPYVF PVNSGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-231010415120Heat shock factor protein 1
5d5u_B4e-231010424129Heat shock factor protein 1
5d5v_B4e-231010424129Heat shock factor protein 1
5d5v_D4e-231010424129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.963580.0embryo| leaf| meristem| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105348
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105348_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418050.0BT041805.1 Zea mays full-length cDNA clone ZM_BFb0058D10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152657.10.0heat shock factor protein 1
SwissprotQ6EUG41e-102HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLB4FXG70.0B4FXG7_MAIZE; Heat stress transcription factor C-1
STRINGGRMZM2G105348_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]