PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G105335_P01 | ||||||||
Common Name | ZEAMMB73_455004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRF | ||||||||
Protein Properties | Length: 401aa MW: 43203 Da PI: 7.9791 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 9.8e-25 | 90 | 133 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e GRMZM2G105335_P01 90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133 79***************************************998 PP | |||||||
2 | QLQ | 58 | 2.9e-20 | 19 | 53 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++ GRMZM2G105335_P01 19 PFTASQWQELEHQALIYKCLASGKPIPSYLMPPLR 53 9******************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-11 | 18 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.814 | 19 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.9E-14 | 19 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 90 | 134 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.2E-20 | 91 | 133 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MMMMSSGRAG GGATAGRYPF TASQWQELEH QALIYKCLAS GKPIPSYLMP PLRRILDSAL 60 ATSPSLAYPP QPSLGWGCFG MGFTRKADED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH 120 MHRGKNRSRK PVEMSLATPA PAPAPAAATT ATATSSPAPS YHRPAHDATP SPYHALYGGG 180 GGGGGSPYSA SARPGATGGG GAYHHAQHVS PFHLHLETTH PHPPPPYNYS ADQRDYAYGH 240 AAAKEVGEHA FFSDGAGERV DRQAAAGQWQ FRQLGVETKP GPTPLFPVAG YGHGAASPYG 300 VEMGKDDDEQ EERRRQHCFV LGADLRLERP SSGHGHGHDH DDAAAAQKPL RPFFDEWPHQ 360 KGDKAGSWMG LDGETQLSMS IPMAATDLPV TSRFRNGGHY E |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G105335 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G105335_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF515842 | 0.0 | EF515842.1 Zea mays putative growth-regulating factor 3 (GRF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676418.1 | 0.0 | putative growth-regulating factor 3 isoform X1 | ||||
Swissprot | Q6AWY8 | 1e-158 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | K7U1V3 | 0.0 | K7U1V3_MAIZE; Growth-regulating factor 6 | ||||
STRING | GRMZM2G105335_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-47 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G105335_P01 |
Entrez Gene | 100101536 |