PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105266_P01
Common NameEREB52, LOC100286032
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 299aa    MW: 31729.8 Da    PI: 7.5788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105266_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19102151255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr ++ +g+++AeIrdp     +  kr +lg+f+taeeAa+a++ a+++l+g
  GRMZM2G105266_P01 102 RFPGVRLRP-WGKYAAEIRDP-----HqrKRLWLGTFDTAEEAAAAYDDAALRLKG 151
                        689******.**********7.....235************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-25102160IPR001471AP2/ERF domain
CDDcd000186.07E-12102161No hitNo description
SMARTSM003801.3E-29102166IPR001471AP2/ERF domain
PROSITE profilePS5103221.219102160IPR001471AP2/ERF domain
PfamPF008477.7E-12102151IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-18103155IPR016177DNA-binding domain
PRINTSPR003679.4E-9103114IPR001471AP2/ERF domain
PRINTSPR003679.4E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSAADSLTSG RGRRAEPPLP RLKRVRVYFV DADATDTDSS GNEDERGKRR VREVIHIDVE  60
SASALTRSAQ PLVLPKKRPL PSQAAAAALV RRRSSGAGFR RRFPGVRLRP WGKYAAEIRD  120
PHQRKRLWLG TFDTAEEAAA AYDDAALRLK GSRHVVTGFP AEAPPPWPRL GLRPRREVPK  180
EAAEGAAEED GEALASAPVP AAAPASLDSQ AVDGTALVCP FSSPISVLRH AADEAPAAPA  240
LPAFEFLYSG LGELGDLGSA TAPSKAVAAE FDCLPWWEGE DFVTVTGLTA SAGAAVSVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16101160463ATERF1
3gcc_A3e-16101160463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.27190.0embryo| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105266
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105266_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278770.0KJ727877.1 Zea mays clone pUT5970 AP2-EREBP transcription factor (EREB52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152392.21e-164AP2 domain containing protein
TrEMBLA0A060D6V30.0A0A060D6V3_MAIZE; AP2 domain containing protein (Fragment)
STRINGGRMZM2G105266_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-15cytokinin response factor 4