PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105224_P01
Common Namemrpi2, mrpi-2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 505aa    MW: 52167.3 Da    PI: 9.9222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105224_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.5e-06257279223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C++Cg+ Fs ++ L+ H  + H
  GRMZM2G105224_P01 257 SCHKCGEQFSKWEALEAHHLSkH 279
                        7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513187.737129IPR006311Twin-arginine translocation pathway, signal sequence
PROSITE profilePS501578.787256284IPR007087Zinc finger, C2H2
PROSITE patternPS000280258279IPR007087Zinc finger, C2H2
SuperFamilySSF563994.46E-22281504No hitNo description
Gene3DG3DSA:3.90.228.101.7E-9305476IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSERRRRASA ASLGGGGGGG VGGVAPARAE EDKVAAPGKA PPPTVWFAFK RSLHCRSEPS  60
EVHVPRAKAG PVAGGGAGAA VGGGHLSSIV TKRAARSGCS RSIANLRDVI HGSKRHPGQP  120
PSCSPRSIGS SEFLNPIAHE VVLSTNSRCE LKITGFGGCG GLAAVGVGTG AANDADGGGD  180
GGVVSSFVGT LRPGTPGPAW AGHGLPYSGS VRGSVRCTPP RSPNVMLERN GSVVNGHRAS  240
CDETAKNGAS KGSGGLSCHK CGEQFSKWEA LEAHHLSKHA VTELVEGDSS RKIVEIICRT  300
SLLKSESSCV RIERVFKVHN TQRTLSRFEE YREAVKLKAS KLAKKHPRCL ADGNELLRFH  360
GATLSCALGG GSGSSSLCAS DKCAVCRIIR HGFSARKEGK GGVGVFTTST SGRAFESIVE  420
APPAIGVGDD DGAGQLGLGT ARRALLVCRV IAGRVHKPLD NLKEFVGQTG FDSLAGKVGP  480
YSNIEELYLL NPRALLPCFV VICRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.158090.0ear| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105224
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105224_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9725840.0EU972584.1 Zea mays clone 383925 nucleic acid binding protein mRNA, complete cds.
GenBankFM2521260.0FM252126.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-2 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151870.10.0uncharacterized protein LOC100285506
RefseqXP_008673012.10.0MRP interacting 2 isoform X1
TrEMBLB6U5R90.0B6U5R9_MAIZE; C2H2 zinc finger protein
STRINGGRMZM2G105224_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Royo J, et al.
    Transcriptional activation of the maize endosperm transfer cell-specific gene BETL1 by ZmMRP-1 is enhanced by two C2H2 zinc finger-containing proteins.
    Planta, 2009. 230(4): p. 807-18
    [PMID:19636587]