PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104866_P02
Common NameLOC100193380, ZEAMMB73_812577
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 349aa    MW: 37523.1 Da    PI: 10.7777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104866_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.7e-1185133356
                AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        y+GV ++    r+ A I+          ++ +lg++ t+eeAa a++aa++ ++g+
  GRMZM2G104866_P02  85 YRGVQQRN--SRYTAAIWNtH-----AaRTLWLGSYETPEEAAYAYDAAARIMRGH 133
                        9***8776..5*****99933.....37*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-1984141IPR001471AP2/ERF domain
PfamPF008472.7E-784133IPR001471AP2/ERF domain
SMARTSM003806.7E-1584146IPR001471AP2/ERF domain
PROSITE profilePS5103214.36884140IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1385140IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MQSHAPPSHP RITRHDARER QLARRNARSR IKHGKLSIWH IWHGANAQAA RMQGGGIVEL  60
ARQAAASART DPAARLAALQ PVRSYRGVQQ RNSRYTAAIW NTHAARTLWL GSYETPEEAA  120
YAYDAAARIM RGHRARPNFP EPEVFAGLVL ALPMPTRARD PAAAAAAHQV AFDNWLSASV  180
AAAEPQRLRS RPPAALFPHH HHHQQRPVPP PPFTQFFYPS DPPATAAANG GAAIANPSMP  240
GAYVLTPQNV RILSPANPAS TALSSTEPVV VDDAQQSGFA PAATHQHREL PPVPHASVYS  300
DEVVVGDNFT DYGASSSSAA RPPVPPLTLT DVLLQVDQPA GRGGSVRAQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104866
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104866_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0356270.0BT035627.1 Zea mays full-length cDNA clone ZM_BFb0073C21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131981.10.0uncharacterized protein LOC100193380
TrEMBLB4FET90.0B4FET9_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G104866_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17311610
Representative plantOGRP1737723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-07ERF domain protein 12