PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G104866_P01 | ||||||||
Common Name | LOC100193380, ZEAMMB73_812577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 31575.3 Da PI: 8.8048 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.4 | 1.3e-11 | 34 | 82 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GV ++ r+ A I+ ++ +lg++ t+eeAa a++aa++ ++g+ GRMZM2G104866_P01 34 YRGVQQRN--SRYTAAIWNtH-----AaRTLWLGSYETPEEAAYAYDAAARIMRGH 82 9***8776..5*****99933.....37*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.7E-15 | 33 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-7 | 33 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.368 | 33 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-19 | 33 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-13 | 34 | 89 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MQGGGIVELA RQAAASARTD PAARLAALQP VRSYRGVQQR NSRYTAAIWN THAARTLWLG 60 SYETPEEAAY AYDAAARIMR GHRARPNFPE PEVFAGLVLA LPMPTRARDP AAAAAAHQVA 120 FDNWLSASVA AAEPQRLRSR PPAALFPHHH HHQQRPVPPP PFTQFFYPSD PPATAAANGG 180 AAIANPSMPG AYVLTPQNVR ILSPANPAST ALSSTEPVVV DDAQQSGFAP AATHQHRELP 240 PVPHASVYSD EVVVGDNFTD YGASSSSAAR PPVPPLTLTD VLLQVDQPAG RGGSVRAQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G104866 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G104866_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035627 | 0.0 | BT035627.1 Zea mays full-length cDNA clone ZM_BFb0073C21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131981.1 | 0.0 | uncharacterized protein LOC100193380 | ||||
TrEMBL | B4FET9 | 0.0 | B4FET9_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G104866_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-07 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G104866_P01 |