PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104789_P01
Common NameLOC103625839, Zm.13874
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 350aa    MW: 37582.7 Da    PI: 8.0067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104789_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  GRMZM2G104789_P01 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding36.51.1e-1170111346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++ eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
  GRMZM2G104789_P01  70 GFSDEEDMIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.588962IPR017930Myb domain
SuperFamilySSF466891.67E-2512109IPR009057Homeodomain-like
SMARTSM007176.5E-121364IPR001005SANT/Myb domain
PfamPF002495.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241569IPR009057Homeodomain-like
CDDcd001675.60E-91662No hitNo description
PROSITE profilePS5129420.75163117IPR017930Myb domain
SMARTSM007174.1E-1167115IPR001005SANT/Myb domain
PfamPF002493.0E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2370117IPR009057Homeodomain-like
CDDcd001672.29E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSDEEDMIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QSRNKDQRQQ HQFMRQLAGS AASDGMVKQE AAAGGDADAA AAGSSSVAVA ATYNWHHHAM  180
AMAMPVQPVP GSTTIMEGHR AEADEVDESI RKLLYKLGGA AGPSTALSSV PQCVRPMYEE  240
RSAASLMPPP PPPPSCPAVV DASSSASLDE GGGVLPALEL DQSFHFGQVK LDGLESFFGM  300
GGQSGMRWWS EASPLVCPSS TVAAASSSSH GMQMQQYCVV VDEPGKLGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104789
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104789_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120181e-142AK112018.1 Oryza sativa Japonica Group cDNA clone:006-308-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644462.10.0transcription factor MYB15 isoform X2
TrEMBLA0A1D6GGA50.0A0A1D6GGA5_MAIZE; R2R3MYB-domain protein
STRINGGRMZM2G104789_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-79myb domain protein 36