PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104551_P01
Common Namecl51309_1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 299aa    MW: 32494.3 Da    PI: 6.7742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104551_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.2e-153885148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEd +l++ +   G  +W+++++  g+ R++k+c++rw +yl
  GRMZM2G104551_P01 38 RGPWTAEEDRKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 85
                       89******************************99************97 PP
2Myb_DNA-binding50.64.4e-1694135447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         T  E++  +d++++lG++ W++Ia++++ gRt++++k++w+++
  GRMZM2G104551_P01  94 LTDAEEQVVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 135
                        5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-202986IPR009057Homeodomain-like
PROSITE profilePS5129413.0853385IPR017930Myb domain
SuperFamilySSF466891.92E-2635132IPR009057Homeodomain-like
SMARTSM007172.3E-123787IPR001005SANT/Myb domain
PfamPF002493.9E-143885IPR001005SANT/Myb domain
CDDcd001671.19E-94085No hitNo description
PROSITE profilePS5129427.53686140IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2587141IPR009057Homeodomain-like
SMARTSM007172.5E-1490138IPR001005SANT/Myb domain
PfamPF002499.2E-1494135IPR001005SANT/Myb domain
CDDcd001671.86E-1195136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGGRRPTYTT RARSAAAALR PAAGMGRQPC CDKLGVKRGP WTAEEDRKLI NFILTNGHCC  60
WRAVPKLAGL LRCGKSCRLR WTNYLRPDLK RGLLTDAEEQ VVIDLHAKLG NRWSKIAAKL  120
PGRTDNEIKN HWNTHIKKKL IKMGIDPVTH EPLDRKTTSS GPATTSQSTK SDEATKEQSP  180
QNDDAVIRDV PADGCSPTES STNTVSTGGS SSSGGGGHDQ DPLVKWLLEE EPATGDEAWL  240
NFTGSVDVDE FSSIAAGPEL LPWDGATDWL LDYQDFGLGD SSLVDGYMVN NNSSNGAKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27381407108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1026870.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104551
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104551_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417710.0BT041771.1 Zea mays full-length cDNA clone ZM_BFb0051B11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307849.10.0uncharacterized protein LOC100101510
RefseqXP_008650758.10.0uncharacterized protein LOC100101510 isoform X1
RefseqXP_023156216.10.0uncharacterized protein LOC100101510 isoform X1
SwissprotQ50EX65e-94ODO1_PETHY; Protein ODORANT1
TrEMBLB4FXD30.0B4FXD3_MAIZE; Uncharacterized protein
STRINGGRMZM2G104551_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-87myb domain protein 42
Publications ? help Back to Top
  1. Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
    Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants.
    Genetics, 1999. 153(1): p. 427-44
    [PMID:10471724]
  2. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  3. Ju C, et al.
    Cloning, chromosome mapping and expression analysis of an R2R3-MYB gene under-expressed in maize hybrid.
    Mol. Biol. Rep., 2006. 33(2): p. 103-10
    [PMID:16817019]