PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104400_P01
Common NameLOC103635637, NAC38, ZEAMMB73_307257, Zm.6616
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 445aa    MW: 49513.2 Da    PI: 4.3657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104400_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-5061331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtd elv++yLk+k+ gkk+ + ++i+evd+yk+ PwdL   +++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd+
  GRMZM2G104400_P01   6 LPPGFRFHPTDVELVSYYLKRKIMGKKHIV-DAIAEVDLYKFPPWDLCdkSSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDR 96 
                        79*************************777.99**************63236667777********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++  ++++vg+kktL+f++g+apkg +tdWvm eyr+
  GRMZM2G104400_P01  97 IIML-NSRTVGMKKTLIFHEGKAPKGDRTDWVMYEYRM 133
                        ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-623156IPR003441NAC domain
PROSITE profilePS5100556.8486156IPR003441NAC domain
PfamPF023651.3E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKHIVDAIAE VDLYKFPPWD LCDKSSLRSK  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRIIML NSRTVGMKKT LIFHEGKAPK  120
GDRTDWVMYE YRMEDEDLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWDNAE  180
VETSLFPLTC SEVNPTEGQR AQPTVLAGAL LEPEPPLHNS SSTCAGEESS FGHATAEDLT  240
FSHSVASSAI QDTPARMSGD GVVSVNNISN VANDMRSPRD CDEFLSELSR FMNDSPLRNT  300
PLGECSGLPP MSEAEAHAFE VNSFGLYNEL SELVGLGCAD NNLNTSNVET TDYLMLPPDR  360
ELSANDYMEL NDLLAPDPSF PSEFSAQDNQ YMQHPLAQYN GHYDLSGPSE PTMPSIFDVF  420
PPNNGVLATD DPANYLDPAM QFPFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-51215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.66160.0aerial organ| ear| embryo| endosperm| meristem| pericarp| pollen| root| sheath| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104400
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104400_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279770.0KJ727977.1 Zea mays clone pUT6091 NAC transcription factor (NAC38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656268.10.0NAC domain-containing protein 82
RefseqXP_020398236.10.0NAC domain-containing protein 82
TrEMBLK7UVJ10.0K7UVJ1_MAIZE; NAC transcription factor
STRINGGRMZM2G104400_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-82NAC domain containing protein 103