PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G104390_P01 | ||||||||
Common Name | LOC100285453, ZEAMMB73_131327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 139aa MW: 14865.9 Da PI: 10.4066 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.6 | 9.4e-20 | 35 | 69 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++ GRMZM2G104390_P01 35 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 69 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.244 | 29 | 65 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.4E-16 | 29 | 83 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-13 | 30 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.9E-16 | 33 | 70 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.53E-13 | 34 | 70 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 35 | 60 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-17 | 35 | 69 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
MSSAAGRAPA PTPMGSADRC KIDGIVAAEK ATRSCVECRA TTTPMWRSGP TGPRSLCNAC 60 GIRYRKKRRQ ELGLDRKLQQ QQNNGEAKTD EAKDSSSNSS SGSSNLQVVQ KRRLLMGVEE 120 AALLLMTLSS SPTSTLLHG |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.9650 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G104390 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G104390_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT041227 | 0.0 | BT041227.1 Zea mays full-length cDNA clone ZM_BFc0190F05 mRNA, complete cds. | |||
GenBank | EU972328 | 0.0 | EU972328.1 Zea mays clone 379713 GATA transcription factor 22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151818.1 | 1e-97 | GATA transcription factor 22 | ||||
TrEMBL | B4FVT9 | 2e-96 | B4FVT9_MAIZE; GATA transcription factor 16 | ||||
STRING | GRMZM2G104390_P01 | 4e-97 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26930.1 | 9e-19 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G104390_P01 |
Entrez Gene | 100285453 |
Publications ? help Back to Top | |||
---|---|---|---|
|