PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G104268_P01 | ||||||||
Common Name | ZEAMMB73_033846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | FAR1 | ||||||||
Protein Properties | Length: 1023aa MW: 115821 Da PI: 6.4178 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.3 | 6.9e-20 | 311 | 397 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +Y+ ++GF ++++++++ +g +++tf Csk g+++ ++ ++ ++ +tgCkak+ vk + +++wev+ leleHnH+l GRMZM2G104268_P01 311 QFYVTYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TKPARKRGVKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 397 6****************99988..9999**************99877..7777788899*************9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.990.10 | 1.1E-16 | 23 | 105 | IPR023173 | NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 |
SuperFamily | SSF63380 | 1.01E-14 | 23 | 109 | IPR017938 | Riboflavin synthase-like beta-barrel |
Pfam | PF00667 | 2.9E-12 | 25 | 105 | IPR003097 | FAD-binding, type 1 |
PRINTS | PR00371 | 1.7E-10 | 167 | 186 | IPR001709 | Flavoprotein pyridine nucleotide cytochrome reductase |
Pfam | PF00175 | 2.1E-6 | 174 | 253 | IPR001433 | Oxidoreductase FAD/NAD(P)-binding |
Gene3D | G3DSA:3.40.50.80 | 8.5E-26 | 174 | 253 | No hit | No description |
SuperFamily | SSF52343 | 6.88E-19 | 174 | 254 | No hit | No description |
PRINTS | PR00371 | 1.7E-10 | 196 | 205 | IPR001709 | Flavoprotein pyridine nucleotide cytochrome reductase |
PRINTS | PR00371 | 1.7E-10 | 209 | 220 | IPR001709 | Flavoprotein pyridine nucleotide cytochrome reductase |
PRINTS | PR00371 | 1.7E-10 | 240 | 256 | IPR001709 | Flavoprotein pyridine nucleotide cytochrome reductase |
Pfam | PF03101 | 1.2E-17 | 311 | 398 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.9E-20 | 520 | 609 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.1E-5 | 799 | 831 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.174 | 799 | 835 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0015 | 810 | 837 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1023 aa Download sequence Send to blast |
MAPLQTSAST TSVTASSGVT AESLLDLSPD TVFSIHADAE DGSPRKGGGS LAPPFPSPCT 60 LRTTLLRYAD LLNPPKKAAL LALASHASDP AEAERLRFLA SPAGKGGRFA SSIMWEPVAL 120 GLLFYRTVLF MPVWHTMLEV VDGSLQNSCN MCISFWAFTN RKDPPRSLFN MDEGLAPFRG 180 FLQERLALKQ SGAELGTSIL FFGCRNRNMD YIYEDELQTF LEAGALSELI VAFSQEGPTK 240 EYVQHKMVEK SDLKILEPME EEEYSSETSN EEDGEKEGNA AESDVFRPVD VDPACLPRVG 300 MIFDSEEDAF QFYVTYGCHA GFGITRRSNN TFDGFRYRST FICSKGGQSR LRSGVTKPAR 360 KRGVKTGCKA KMIVKDAHFQ NRWEVIVLEL EHNHPLDPNL LKFKRHLKNS PFTINPPQIC 420 ESEGQQSNSA LVHSSRVVDT GITSSSTQIE FKAKIDRNRK LKLAEGDLDA LLDFLNKMQD 480 QNPCFFYSLD MNEQGQLRNV FWSDAKSRSS YNYFGDVVAI NVTNFSDQYD MQFVSFMGTN 540 HHAQPVLLGC GLLAGRSLGA YVWLFGTWLR CMNAKPPHSI ITNYCHDVAI AIKKVFPNAR 600 HRFCLSHILN VLPEKLEEID NKDEIISTFT TLAYDYVTMT DFDREWQDTI QHFRLERNEW 660 LSKLYEVRMQ WAPVYVKDSF WAGMSVTDRS DSVTDYFDGW LMSGTSLKMF VEQYEEAVKG 720 KLEKESYEDL RSAQMRPPMV TGLPVEDQAA KVYTAEIFQK FFNEIGHSFH CNYNILERNE 780 SVVTYIVSEH VDQTNKVDYK VAYDNVQGDI WCLCRLYQSK GILCRHALTV LRQELVLMIP 840 QKYIIHRWCK DCKQTCASIS QPVSAEVVEF GSMNSESKEY ALSIMREVRD KVISYEKSLR 900 DQRVDSHVST ANFAYNPVNE DFTDDALPIS LSTKGWDLTQ GQSKRSRKKK LATPTVLDTL 960 KKKTKRAYNK RRNATANTLN TSATATDGIT DGTNVENISF DLSQYNNAPS FHWPESSSRS 1020 QLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gxu_A | 6e-53 | 24 | 251 | 298 | 577 | NADPH--cytochrome P450 reductase 2 |
5gxu_B | 6e-53 | 24 | 251 | 298 | 577 | NADPH--cytochrome P450 reductase 2 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G104268 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G104268_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401724.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X1 | ||||
TrEMBL | A0A1D6JGA3 | 0.0 | A0A1D6JGA3_MAIZE; Protein FAR1-RELATED SEQUENCE 6 | ||||
STRING | GRMZM2G104268_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-104 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G104268_P01 |