PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104268_P01
Common NameZEAMMB73_033846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 1023aa    MW: 115821 Da    PI: 6.4178
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104268_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.36.9e-20311397190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY +Y+ ++GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++   +tgCkak+ vk  + +++wev+ leleHnH+l 
  GRMZM2G104268_P01 311 QFYVTYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TKPARKRGVKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 397
                        6****************99988..9999**************99877..7777788899*************9****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.990.101.1E-1623105IPR023173NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3
SuperFamilySSF633801.01E-1423109IPR017938Riboflavin synthase-like beta-barrel
PfamPF006672.9E-1225105IPR003097FAD-binding, type 1
PRINTSPR003711.7E-10167186IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
PfamPF001752.1E-6174253IPR001433Oxidoreductase FAD/NAD(P)-binding
Gene3DG3DSA:3.40.50.808.5E-26174253No hitNo description
SuperFamilySSF523436.88E-19174254No hitNo description
PRINTSPR003711.7E-10196205IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
PRINTSPR003711.7E-10209220IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
PRINTSPR003711.7E-10240256IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
PfamPF031011.2E-17311398IPR004330FAR1 DNA binding domain
PfamPF105518.9E-20520609IPR018289MULE transposase domain
PfamPF044341.1E-5799831IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.174799835IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015810837IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MAPLQTSAST TSVTASSGVT AESLLDLSPD TVFSIHADAE DGSPRKGGGS LAPPFPSPCT  60
LRTTLLRYAD LLNPPKKAAL LALASHASDP AEAERLRFLA SPAGKGGRFA SSIMWEPVAL  120
GLLFYRTVLF MPVWHTMLEV VDGSLQNSCN MCISFWAFTN RKDPPRSLFN MDEGLAPFRG  180
FLQERLALKQ SGAELGTSIL FFGCRNRNMD YIYEDELQTF LEAGALSELI VAFSQEGPTK  240
EYVQHKMVEK SDLKILEPME EEEYSSETSN EEDGEKEGNA AESDVFRPVD VDPACLPRVG  300
MIFDSEEDAF QFYVTYGCHA GFGITRRSNN TFDGFRYRST FICSKGGQSR LRSGVTKPAR  360
KRGVKTGCKA KMIVKDAHFQ NRWEVIVLEL EHNHPLDPNL LKFKRHLKNS PFTINPPQIC  420
ESEGQQSNSA LVHSSRVVDT GITSSSTQIE FKAKIDRNRK LKLAEGDLDA LLDFLNKMQD  480
QNPCFFYSLD MNEQGQLRNV FWSDAKSRSS YNYFGDVVAI NVTNFSDQYD MQFVSFMGTN  540
HHAQPVLLGC GLLAGRSLGA YVWLFGTWLR CMNAKPPHSI ITNYCHDVAI AIKKVFPNAR  600
HRFCLSHILN VLPEKLEEID NKDEIISTFT TLAYDYVTMT DFDREWQDTI QHFRLERNEW  660
LSKLYEVRMQ WAPVYVKDSF WAGMSVTDRS DSVTDYFDGW LMSGTSLKMF VEQYEEAVKG  720
KLEKESYEDL RSAQMRPPMV TGLPVEDQAA KVYTAEIFQK FFNEIGHSFH CNYNILERNE  780
SVVTYIVSEH VDQTNKVDYK VAYDNVQGDI WCLCRLYQSK GILCRHALTV LRQELVLMIP  840
QKYIIHRWCK DCKQTCASIS QPVSAEVVEF GSMNSESKEY ALSIMREVRD KVISYEKSLR  900
DQRVDSHVST ANFAYNPVNE DFTDDALPIS LSTKGWDLTQ GQSKRSRKKK LATPTVLDTL  960
KKKTKRAYNK RRNATANTLN TSATATDGIT DGTNVENISF DLSQYNNAPS FHWPESSSRS  1020
QLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gxu_A6e-5324251298577NADPH--cytochrome P450 reductase 2
5gxu_B6e-5324251298577NADPH--cytochrome P450 reductase 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104268
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104268_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401724.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A1D6JGA30.0A0A1D6JGA3_MAIZE; Protein FAR1-RELATED SEQUENCE 6
STRINGGRMZM2G104268_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-104FAR1-related sequence 6