PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G104246_P02 | ||||||||
Common Name | ZEAMMB73_286736, Zm.22498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | CPP | ||||||||
Protein Properties | Length: 235aa MW: 25453.6 Da PI: 10.3324 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42.3 | 1.5e-13 | 153 | 192 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +kk CnC++s+Clk+YCeCfa+g++C+ C+C++C+N+ e+ GRMZM2G104246_P02 153 KKKCCNCRNSRCLKLYCECFASGTHCDG-CNCTNCFNNPEN 192 799*************************.********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.5E-13 | 152 | 192 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 19.177 | 153 | 235 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.0E-10 | 154 | 189 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAGKEQGGGG PPQRPPMPAA SMQPPIKKLV RQLDFNSAAL AGNPAMAAAA AAVSRALQPR 60 ALPAGFQHPQ HVRAAVPMVV PQQLHQRALP VMRPHPVVGH VPRHAVPLAV PVPQLRPMPP 120 QPVQRPPVAV PLKPDSPKPW ARLYEGKDST PTKKKCCNCR NSRCLKLYCE CFASGTHCDG 180 CNCTNCFNNP ENEVARREAI EATLERNPDA FRPKIGSSPH TNRNNVCSVV QILFV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.22498 | 0.0 | embryo| meristem| ovary| pericarp| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G104246 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G104246_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657203.1 | 1e-161 | protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1D6GB29 | 1e-160 | A0A1D6GB29_MAIZE; Protein tesmin/TSO1-like CXC 5 | ||||
STRING | GRMZM2G104246_P01 | 1e-161 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 3e-29 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G104246_P02 |