PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G104204_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 25568.6 Da PI: 6.3696 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.1 | 1.9e-10 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq+e Le F+++r++ + ++ +L +++gL+ +qV vW rRa k GRMZM2G104204_P01 60 KKRRLTDEQVEMLELSFREERKLETGRKVHLGAEIGLDPQQVAVWVPKRRAPPK 113 56689****************************************999998666 PP | |||||||
2 | HD-ZIP_I/II | 69.3 | 8.1e-23 | 60 | 122 | 2 | 64 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 kkrrl++eqv++LE sF+ee+kLe+ rKv+l e+gl+p+qvavW rRA k k lE+++ GRMZM2G104204_P01 60 KKRRLTDEQVEMLELSFREERKLETGRKVHLGAEIGLDPQQVAVWVPKRRAPPKRKLLEEEVG 122 9**********************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.0E-10 | 53 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.357 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-5 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.5E-8 | 60 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 60 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.02E-7 | 60 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEQYDGLFPP AYVDSSSSLL LVPNANGTAQ EERPRARRRR RRAARCGGGG GELDGGGDHK 60 KRRLTDEQVE MLELSFREER KLETGRKVHL GAEIGLDPQQ VAVWVPKRRA PPKRKLLEEE 120 VGQYIYNIEH AFRGHMPGWK VTRLKDKLVL AEEELTRFRS AGNDAVSGDG GDVMARAVCS 180 GSPSSSFSTG TCQQPGGGGG GGDHLGDDDL LYVPDYAYAD SSVVEWFSLY GLM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 41 | RPRARRRRRR |
2 | 36 | 44 | RRRRRRAAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.22959 | 0.0 | pedicel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G104204 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G104204_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039959 | 1e-179 | BT039959.1 Zea mays full-length cDNA clone ZM_BFc0054M14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140916.1 | 2e-92 | uncharacterized protein LOC100272993 | ||||
Swissprot | Q7XI85 | 1e-57 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A3L6E1Z9 | 9e-96 | A0A3L6E1Z9_MAIZE; Homeobox-leucine zipper protein HOX14 | ||||
STRING | GRMZM2G104204_P01 | 1e-170 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 | Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-19 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G104204_P01 |
Publications ? help Back to Top | |||
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