PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G104078_P02 | ||||||||
Common Name | ZEAMMB73_650881, Zm.80622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 44949.7 Da PI: 5.9164 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88 | 1.8e-27 | 57 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+P++ el+ ++L++kv + + +e+i+++d i++++P++Lp +k++ ++ +fF++ +k+y g+rk+r GRMZM2G104078_P02 57 LPAGVKFDPSELELL-QHLEQKVGLGDsrphvlI--DEFIPTIDndegICYSHPENLP-GMKTDGSNAHFFHRVSKAYGYGQRKRRRiincs 144 799************.99****987776776443..333444433444**********.7788899********************668888 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ +W++tg++k++++ +g +g kk++v++k + k e+++Wvmh+y+l GRMZM2G104078_P02 145 dhtvpDDRVRWHKTGRSKAIYD-NGVIKGWKKIMVLHKTlrSGGKRERAKWVMHQYHL 201 8876655899************.999***********76324455569********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-34 | 41 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.536 | 57 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-11 | 58 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MARSWLITCR GIAKKIRYAN PSANRQISQL IAEARRECPN CSYVIDNSDV AMQWPGLPAG 60 VKFDPSELEL LQHLEQKVGL GDSRPHVLID EFIPTIDNDE GICYSHPENL PGMKTDGSNA 120 HFFHRVSKAY GYGQRKRRRI INCSDHTVPD DRVRWHKTGR SKAIYDNGVI KGWKKIMVLH 180 KTLRSGGKRE RAKWVMHQYH LGKEEDEKDG ELVVSKIFFQ LANKSMEISE TETACEEPEA 240 PASVIGPKTP KTITPQPRHP KSSPCETQQN ISIVQDQLLL DSEGEPTMPI VSLEDDAMNP 300 AWCAVAEERQ VVGEASRAQS NSVETLLCRE DPNSLNYEAL LPWDYPILSQ CRNEMLDGNL 360 NGYGLPDHHN VDLGTPPDLQ LADFQFGSQE SLGSWLDRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.80622 | 0.0 | meristem| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G104078 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G104078_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962435 | 0.0 | EU962435.1 Zea mays clone 242654 ANAC044 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149204.1 | 0.0 | uncharacterized protein LOC100282826 | ||||
Refseq | XP_008677272.1 | 0.0 | putative NAC domain transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q6NQK2 | 5e-78 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | B6TBS0 | 0.0 | B6TBS0_MAIZE; ANAC044 | ||||
STRING | GRMZM2G104078_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 2e-78 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G104078_P02 |
Entrez Gene | 100282826 |