PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104074_P01
Common NameLOC606435, ZEAMMB73_741481, Zm.24976
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 357aa    MW: 40012.4 Da    PI: 6.8473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104074_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.9e-52101391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL++  k+ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  GRMZM2G104074_P01  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKErcKIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 100
                        69****************************.9***************953444443456********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++  + + +gl+ktLvfy grap+g+kt+W+mheyrl
  GRMZM2G104074_P01 101 KAIFLGSARRIGLRKTLVFYIGRAPHGKKTEWIMHEYRL 139
                        *****99999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-585159IPR003441NAC domain
PROSITE profilePS5100557.76610159IPR003441NAC domain
PfamPF023651.6E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MHPGVGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKERCK  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSARR IGLRKTLVFY  120
IGRAPHGKKT EWIMHEYRLD EENVEIQEDG WVVCRVFKKK NYEQRGHNMA EMAALDDDEL  180
QPFTVPVVPA GTSSLPTTDH KNNPHLMQYD FPSFDPSMQL PQLMSADQPV PTLFPSHPGV  240
ATAMSSSIDV ECSQNLLTML TSNGSDGMLH VRAGGAGAGV DRFAGTTDWS ILDKLLASHQ  300
NLDQLFHGKV TAASASPMAP YHQQLMELGG SSSSSSLQRL PLQYLSGETT DLLRFPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51816515171NO APICAL MERISTEM PROTEIN
1ut4_B2e-51816515171NO APICAL MERISTEM PROTEIN
1ut7_A2e-51816515171NO APICAL MERISTEM PROTEIN
1ut7_B2e-51816515171NO APICAL MERISTEM PROTEIN
3swm_A2e-51816518174NAC domain-containing protein 19
3swm_B2e-51816518174NAC domain-containing protein 19
3swm_C2e-51816518174NAC domain-containing protein 19
3swm_D2e-51816518174NAC domain-containing protein 19
3swp_A2e-51816518174NAC domain-containing protein 19
3swp_B2e-51816518174NAC domain-containing protein 19
3swp_C2e-51816518174NAC domain-containing protein 19
3swp_D2e-51816518174NAC domain-containing protein 19
4dul_A2e-51816515171NAC domain-containing protein 19
4dul_B2e-51816515171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.249760.0embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104074
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104074_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8339650.0AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399653.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-116NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLK7W9B60.0K7W9B6_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G104074_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.35e-95NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zimmermann R,Werr W
    Pattern formation in the monocot embryo as revealed by NAM and CUC3 orthologues from Zea mays L.
    Plant Mol. Biol., 2005. 58(5): p. 669-85
    [PMID:16158242]