PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G103783_P02 | ||||||||
Common Name | Zm.9524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 587aa MW: 62805.2 Da PI: 10.3105 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 24 | 74 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 W t E++ll++av+++G+ +W+++a +++ g+t+ +c++r++ GRMZM2G103783_P02 24 WGTLEELLLACAVTRHGTASWDSVAMEVQtripvaarPGLTPHSCRLRFRH 74 9999********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.78E-5 | 19 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 19 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-4 | 20 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-9 | 24 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.249 | 24 | 76 | IPR017877 | Myb-like domain |
SuperFamily | SSF47370 | 1.31E-6 | 245 | 340 | IPR001487 | Bromodomain |
Pfam | PF00439 | 1.1E-4 | 261 | 325 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 2.9E-6 | 262 | 361 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MADGTDVSPE SEATAAAGKS GEIWGTLEEL LLACAVTRHG TASWDSVAME VQTRIPVAAR 60 PGLTPHSCRL RFRHLHRRFS TVGSGGVEEA EEDPDASAAE GWVDELRRLR VAELRRDVER 120 CDLSIGTLQS KVKRLKAERE QRASGEAVSD HDRLSSEEPG CSCRESNSTD LKPPKHPSQL 180 GDGSKEEKVA KQEASVESAV DSKDSSEVRS SASLCRRRRG SGNAEEEEAE AEASKSSPLT 240 FLLDAVLAKL GCVLDRLREN DSEESAMYRD TIRRHVDLET LRRRLNASAG SRADDDSHSS 300 AHELYRDLLL LCTNIVVFFP GGTPENSAAV EARALVTGHA SAVLHKPKQE NVAVAAPAPA 360 SADIVGSLIE KGKPLIVCRK RSSIAKAAAS ARKEENTMKG ETAEETEDEK KSVAAATKDK 420 TWGVRTKKSR GGKNSAGPGR NLADGADGPR KGAGAGTDGL AKKRNAVDFL KRLNQSPPRK 480 RGSGSHLGTT RKRPAAMEEQ TTKRKRGTGR KEGTGRGGSR RGGKAAGAKR GVGRPQKRGL 540 APATPPPSKR TKTNSSRSEK SLGTGKRGGR RQSIFIDHVV GDALTLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 490 | 505 | RKRPAAMEEQTTKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9524 | 0.0 | cell culture| endosperm| meristem| ovary| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G103783 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G103783_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971481 | 0.0 | EU971481.1 Zea mays clone 365900 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354230.1 | 0.0 | uncharacterized protein LOC100277965 | ||||
TrEMBL | A0A1D6I782 | 0.0 | A0A1D6I782_MAIZE; DNA-binding bromodomain-containing protein | ||||
STRING | GRMZM2G103783_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3181 | 26 | 48 | Representative plant | OGRP3805 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 1e-21 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G103783_P02 |