PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G103783_P02
Common NameZm.9524
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 587aa    MW: 62805.2 Da    PI: 10.3105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G103783_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-102474446
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                       W t E++ll++av+++G+ +W+++a +++         g+t+ +c++r++ 
  GRMZM2G103783_P02 24 WGTLEELLLACAVTRHGTASWDSVAMEVQtripvaarPGLTPHSCRLRFRH 74
                       9999********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.78E-51978IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-41977IPR009057Homeodomain-like
SMARTSM007178.3E-42078IPR001005SANT/Myb domain
PfamPF002498.5E-92473IPR001005SANT/Myb domain
PROSITE profilePS500906.2492476IPR017877Myb-like domain
SuperFamilySSF473701.31E-6245340IPR001487Bromodomain
PfamPF004391.1E-4261325IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.9E-6262361IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MADGTDVSPE SEATAAAGKS GEIWGTLEEL LLACAVTRHG TASWDSVAME VQTRIPVAAR  60
PGLTPHSCRL RFRHLHRRFS TVGSGGVEEA EEDPDASAAE GWVDELRRLR VAELRRDVER  120
CDLSIGTLQS KVKRLKAERE QRASGEAVSD HDRLSSEEPG CSCRESNSTD LKPPKHPSQL  180
GDGSKEEKVA KQEASVESAV DSKDSSEVRS SASLCRRRRG SGNAEEEEAE AEASKSSPLT  240
FLLDAVLAKL GCVLDRLREN DSEESAMYRD TIRRHVDLET LRRRLNASAG SRADDDSHSS  300
AHELYRDLLL LCTNIVVFFP GGTPENSAAV EARALVTGHA SAVLHKPKQE NVAVAAPAPA  360
SADIVGSLIE KGKPLIVCRK RSSIAKAAAS ARKEENTMKG ETAEETEDEK KSVAAATKDK  420
TWGVRTKKSR GGKNSAGPGR NLADGADGPR KGAGAGTDGL AKKRNAVDFL KRLNQSPPRK  480
RGSGSHLGTT RKRPAAMEEQ TTKRKRGTGR KEGTGRGGSR RGGKAAGAKR GVGRPQKRGL  540
APATPPPSKR TKTNSSRSEK SLGTGKRGGR RQSIFIDHVV GDALTLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490505RKRPAAMEEQTTKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.95240.0cell culture| endosperm| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G103783
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G103783_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714810.0EU971481.1 Zea mays clone 365900 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354230.10.0uncharacterized protein LOC100277965
TrEMBLA0A1D6I7820.0A0A1D6I782_MAIZE; DNA-binding bromodomain-containing protein
STRINGGRMZM2G103783_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-21DNA-binding bromodomain-containing protein