PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G103647_P01 | ||||||||
Common Name | bZIP17, LOC100284034, ZEAMMB73_544155 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 282aa MW: 30142.3 Da PI: 4.9353 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51.5 | 2.3e-16 | 120 | 172 | 3 | 55 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 e kr rr+ +NRe+ArrsR+RK+a++ Le v+ L++eN +L ++l+ +++ GRMZM2G103647_P01 120 ETKRIRRMVSNRESARRSRRRKQAQLSDLESQVERLKGENATLFQQLSDANQQ 172 579****************************************9776665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.1E-16 | 118 | 182 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.3E-14 | 120 | 172 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.312 | 120 | 172 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.7E-14 | 122 | 173 | No hit | No description |
SuperFamily | SSF57959 | 2.13E-12 | 122 | 173 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 125 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MKKCASELEL EAFIRESGED ARAAAGGSSP GCGGSSDPGG SGVFSPGFGF ADSDTMDGGS 60 WWYGNVRTPN PVMSQAASIS ASPGLTTSAN HALESESDSD SESLYEVEGV PYERGNRSIE 120 TKRIRRMVSN RESARRSRRR KQAQLSDLES QVERLKGENA TLFQQLSDAN QQFSTAVTDN 180 RILKSDVEAL RIKVKMAEDM VARSAVSCGL GDLGLAPYVN SRKMCQALNV LTGLDLLGSD 240 AFRGPTAGTR VQNSPVQSTA SLESLDNRKS NEVTSCAADI WP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 141 | RRSRRRKQ |
2 | 136 | 141 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.10293 | 0.0 | cell culture| ear| endosperm| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G103647 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G103647_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061821 | 0.0 | BT061821.1 Zea mays full-length cDNA clone ZM_BFb0185P06 mRNA, complete cds. | |||
GenBank | EU966841 | 0.0 | EU966841.1 Zea mays clone 297691 light-inducible protein CPRF-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150404.1 | 0.0 | uncharacterized protein LOC100284034 | ||||
Swissprot | Q654B3 | 8e-99 | RSBZ5_ORYSJ; bZIP transcription factor RISBZ5 | ||||
TrEMBL | B6TPC6 | 0.0 | B6TPC6_MAIZE; BZIP transcription factor | ||||
STRING | GRMZM2G103647_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2095 | 37 | 96 | Representative plant | OGRP6956 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 2e-29 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G103647_P01 |
Entrez Gene | 100284034 |
Publications ? help Back to Top | |||
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