PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G103085_P01 | ||||||||
Common Name | LOC100285604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25015.3 Da PI: 8.9363 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 111 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r +r +lg+f+tae+Aa+a++ a+ +l+g GRMZM2G103085_P01 111 QYRGVRRRP-WGKWAAEIRDPR----RaARKWLGTFDTAEDAARAYDVAAVELRG 160 59*******.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-34 | 111 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 111 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.541 | 111 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 111 | 169 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.97E-27 | 111 | 167 | No hit | No description |
PRINTS | PR00367 | 2.7E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-13 | 112 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAAPRLERGG FQLPNTEQEN SLFLRALISV VSGDTAALLP EAAAVEAPAA PVACARCGAD 60 GCAAAGCCEL VAGSSSDSDD AGCSGTRANG GGLGLGLGAS KRRGRGRKVI QYRGVRRRPW 120 GKWAAEIRDP RRAARKWLGT FDTAEDAARA YDVAAVELRG QRAKLNFPAR AAAAAPAAVQ 180 PPHHRPLPDR SLRENCGSNA ASPVHVALAP TTQQNIWEGL NEIMMMEEER SFWSMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-22 | 103 | 168 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 117 | KRRGRGRKVIQYRGVRRR |
2 | 101 | 118 | RRGRGRKVIQYRGVRRRP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G103085 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G103085_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974975 | 0.0 | EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241699.1 | 1e-169 | ethylene-responsive element binding protein 2 | ||||
TrEMBL | B6UCL0 | 1e-168 | B6UCL0_MAIZE; Ethylene-responsive element binding protein 2 | ||||
STRING | GRMZM2G103085_P01 | 1e-169 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 6e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G103085_P01 |
Entrez Gene | 100285604 |
Publications ? help Back to Top | |||
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