PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G102938_P02 | ||||||||
Common Name | LOC100193386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 164aa MW: 18066.5 Da PI: 6.7877 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.7 | 9.9e-14 | 36 | 113 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f +v+ +s v + +lv+p +f ++ + + + l + rsW+v + + +++ l++ W++F+++ngL+ gD +vF+l GRMZM2G102938_P02 36 FTSVMRKSQVQNPFQLVIPVRFHRHLPE-ARAPAVLL---CRDRSWTVSY--AGVGKWKRLQGAWRDFARDNGLRLGDACVFEL 113 7889999***************955532.23442333...467*******..99999999**********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-23 | 29 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-18 | 31 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.30E-18 | 34 | 142 | No hit | No description |
SMART | SM01019 | 1.3E-6 | 36 | 144 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 36 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-11 | 36 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MEVRGSAPSM KPKVEPPLEA SHDWEVTPLS GDNPFFTSVM RKSQVQNPFQ LVIPVRFHRH 60 LPEARAPAVL LCRDRSWTVS YAGVGKWKRL QGAWRDFARD NGLRLGDACV FELLVPSTDA 120 TQGDGDGSKD QGEVVFRVQV LRGGLPAEIT SRGATSDDPL VIVD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.124020 | 0.0 | ear| endosperm | ||||
Zm.136650 | 0.0 | ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G102938 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G102938_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968766 | 0.0 | EU968766.1 Zea mays clone 324000 B3 DNA binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001339180.1 | 1e-118 | uncharacterized protein LOC100193386 | ||||
Refseq | XP_023155999.1 | 1e-118 | uncharacterized protein LOC100193386 isoform X2 | ||||
TrEMBL | B6TUV1 | 1e-116 | B6TUV1_MAIZE; B3 DNA binding domain containing protein | ||||
STRING | GRMZM2G102938_P01 | 1e-111 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G102938_P02 |
Entrez Gene | 100193386 |
Publications ? help Back to Top | |||
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