PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G102845_P01
Common NameLOC103626605, Zm.67188
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 1147aa    MW: 127240 Da    PI: 6.0846
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G102845_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.49.9e-22148249199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      g++++  ++l+ +d + ++W++++i+r++++r++lt+GW+ Fv  ++L +gD+v+F   +
  GRMZM2G102845_P01 148 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfGMQPPA-QELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVGGKRLFAGDSVIFV--R 236
                        99*****************************9666665.49************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++++l+++++r+
  GRMZM2G102845_P01 237 DERQQLLLGIRRA 249
                        577888****997 PP
2Auxin_resp1163.3e-38274357183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+   rr++Gt++g++dldpvrW+nS+Wr+L+
  GRMZM2G102845_P01 274 AAHAAANNSPFTIFYNPRASPTEFVIPFAKFQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGITDLDPVRWKNSQWRNLQ 357
                        79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.76E-40137277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-38141263IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-18147239No hitNo description
SMARTSM010199.5E-21148250IPR003340B3 DNA binding domain
PROSITE profilePS5086311.434148250IPR003340B3 DNA binding domain
PfamPF023621.8E-19148249IPR003340B3 DNA binding domain
PfamPF065075.4E-33274357IPR010525Auxin response factor
PfamPF023092.5E-810111099IPR033389AUX/IAA domain
PROSITE profilePS5174528.64810141098IPR000270PB1 domain
SuperFamilySSF542778.5E-710271093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1147 aa     Download sequence    Send to blast
MKQSPASSGV TAAPVVPAPA PAAASTGAAP PCEGERKAPA INADLWYACA GPLVSLPPVG  60
SLVVYFPQGH SEQVAASMQK DIDAHVPSYP NLPSKLICLL HSVTLHADPD TDEVYAQMTL  120
QPVNTYGKEA LQLSELALKH ARPQMEFFCK TLTASDTSTH GGFSVPRRAA EKILPPLDFG  180
MQPPAQELQA RDIHDNVWTF RHIFRGQPKR HLLTTGWSLF VGGKRLFAGD SVIFVRDERQ  240
QLLLGIRRAS RQPTNISSSV LSSDSMHIGV LAAAAHAAAN NSPFTIFYNP RASPTEFVIP  300
FAKFQKALYS NQISLGMRFR MMFETEELGM RRYMGTITGI TDLDPVRWKN SQWRNLQVGW  360
DESAAGERRN RVSMWEIEPI AAPFFICPQP FFGVKRPRQI DDESSEMENL FKRAMPWLGE  420
EICIKDAQTH NTTMPGLSLV QWMNMNRPQS STLNTGIQSE YLRSLSNPAM QNLGAAELAR  480
QLYVQNHLLQ QNSVQLNASK LPQQVQPINE LAKGSLSCNQ LDVIINQQEL KQEVGNQQRQ  540
QQPVNQAIPL SQAQTNLVQA QVIIQNQMQQ QQQQQQQSPT RCQKGTSVQQ LLLSQQQQDQ  600
NFQLQQQQQL LLQQLQQQNQ QQQQQQQNQQ QLNKLPAQLV NLAGQQAQLS DQELQLQLLQ  660
KLQQQSLVSQ PTVTLSPLQV IQEQQKLLLD MQQLSSSHSL AQQRILPQQD SDVSLQASQA  720
PPPMKQEQQK PSQKQFVLAD VSDVVYPQIS STNVLSKAGT QLMTPGATQS VLTEEIPSCS  780
TSPSTATGNH LAYPIIGRNE HCKVTIEKVP QSSSLMSIPT AGEAVTTPIM AKELSKLNHN  840
LKENVTTSKS PIVGTGHENL LNIVPSTDNL ETASSATSLW PTQTDGLLHQ GFPTNFNQQQ  900
MFKDALPDVE IQEVDPTNNA FFGINSDGPL GFPMETEGLL VSAINPVKCQ PNLSTDVEIN  960
YRIQKDAQQE ISTSMVSQSF GQSDIAFNSI DSAINDGVML NRNSCPPAPP QRMRTFTKVY  1020
KRGAVGRSID IGRFSGYEEL KHAVARMFGI EGQLEDRQRI GWKLVYTDHE DDVLLLGDDP  1080
WEEFVNCVKC IRILSPQEVQ QMSLDGDLGN NVLSNQACSS SDGGNAWKPR RDQNPGNPSI  1140
GFYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1633437845388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.671880.0ear| meristem| pericarp| root| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G102845
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G102845_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045350.0HM004535.1 Zea mays auxin response factor 20 (ARF20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645235.10.0auxin response factor 5
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1D6H0E30.0A0A1D6H0E3_MAIZE; Auxin response factor
STRINGGRMZM2G102845_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19