PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G102790_P01
Common NameMYB57
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 361aa    MW: 37738.4 Da    PI: 7.0328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G102790_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.8e-191562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+llvd+++++G g+W++ ++  g++R++k+c++rw +yl
  GRMZM2G102790_P01 15 KGPWTPEEDKLLVDYINEHGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                       79********************************************97 PP
2Myb_DNA-binding574.6e-1868113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rgr+T +E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  GRMZM2G102790_P01  68 RGRFTDDEEDLIVHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24765IPR009057Homeodomain-like
PROSITE profilePS5129418.6171062IPR017930Myb domain
SuperFamilySSF466894.77E-3112109IPR009057Homeodomain-like
SMARTSM007176.6E-161464IPR001005SANT/Myb domain
PfamPF002496.2E-181562IPR001005SANT/Myb domain
CDDcd001678.27E-131762No hitNo description
PROSITE profilePS5129427.91863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2666117IPR009057Homeodomain-like
SMARTSM007172.5E-1667115IPR001005SANT/Myb domain
PfamPF002495.2E-1668113IPR001005SANT/Myb domain
CDDcd001672.78E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRSPCCDQD AGVKKGPWTP EEDKLLVDYI NEHGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDDEEDLIV HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLSM  120
GIDPVTHQRR TDLNLLAAGF PSLLAAANFA AAAGAPAPTA TGPLAAAHVS SWDINALRLQ  180
ADAAKYQLLE GLVRVLTAPA AAPTVGLMTL LAAANGGAPS GHQQSTRVVQ QCDGMLSLPA  240
LTSVPPVTTP PGTSSAAYSL SGLLFGGAGT TTTAPAAGDG LSSTDQLGHS GATTGSNITA  300
AAMPPPLSSA AAEGCNGAGK GCGRSTPSTC DETPASSPFD SLDSLTLDFD HNSDSWRELL  360
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-29151174105C-Myb DNA-Binding Domain
1msf_C2e-29151174105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G102790
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G102790_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278200.0KJ727820.1 Zea mays clone pUT5772 MYB transcription factor (MYB57) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648740.10.0transcription factor MYB39
TrEMBLK7UCA00.0K7UCA0_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G102790_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-78myb domain protein 9