PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G102218_P01
Common NameZEAMMB73_586160, Zm.121737
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 308aa    MW: 33941 Da    PI: 8.745
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G102218_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY59.71.3e-18104148246
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46 
                        d++s+se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l 
  GRMZM2G102218_P01 104 DTVSQSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLS 148
                        78899*************************************984 PP
2YABBY93.64.9e-29189249102162
              YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                        s  +++ +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  GRMZM2G102218_P01 189 SPTSTDLTPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 249
                        556677789**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-46108250IPR006780YABBY protein
SuperFamilySSF470956.15E-8197251IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.1E-5204251IPR009071High mobility group box domain
CDDcd013904.22E-5211252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MCAWGPGIIA GIETLPPSPL VACSTDSSSS SSTSRPVSSP FFVCLCLLVS RLTTQLASRQ  60
PDTRCFQISH RTVVVGPSEN IPPRPPPRAP PRPRTPAGHQ ASMDTVSQSE HLCYVRCTYC  120
NTVLAVGVPC KRLMDTVTVK CGHCNNLSYL SPRPPMVQPL SPTDHPLGPF QCQGPCSECR  180
RNQPLPLASP TSTDLTPRMP FVVKPPEKKH RLPSAYNRFM REEIQRIKAA KPDIPHREAF  240
SMAAKNWAKC DPRCSTTAST ATSNSAPEPA RVVVPTPHVT EPRFDLEDRA KEHVIESFDI  300
FKQIERNI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1217370.0ear| endosperm| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G102218
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G102218_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873250.0BT087325.1 Zea mays full-length cDNA clone ZM_BFb0040H18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183591.11e-150uncharacterized protein LOC100502185
SwissprotQ76EJ01e-110YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLC4J9281e-149C4J928_MAIZE; DL related protein
STRINGGRMZM2G102218_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.15e-50YABBY family protein