PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G102059_P01
Common NameABI12, LOC103646035, Zm.33238
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 409aa    MW: 43859.6 Da    PI: 6.1258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G102059_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.14.6e-3094194195
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f+kv tpsdv+k++rlv+pk++ae++       +e+++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+
  GRMZM2G102059_P01  94 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGQLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGaGD 185
                        89***************************944556888************************************************855455 PP

                        .SEE..EEE CS
                 B3  88 .sefelvvk 95 
                          + +l++ 
  GRMZM2G102059_P01 186 tARDRLFID 194
                        455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-4284204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-2991185IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-2692179No hitNo description
PfamPF023622.3E-2794198IPR003340B3 DNA binding domain
SMARTSM010193.6E-2194199IPR003340B3 DNA binding domain
PROSITE profilePS5086314.07194199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEFASSSSRF SREEDEEEEQ EEEEEEEEAS PREIPFMTAA ATADTGAAAS SSSPSAAASS  60
GPAAAPRSSD GAGASGSGGG GSDDVQVIEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF  120
PLDAAANEKG QLLSFEDRAG KLWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFC  180
RGAGDTARDR LFIDWKRRAD SRDPHRMPRL PLPMAPVASP YGPWGGGGGG GAGGFFMPPA  240
PPATLYEHHR FRQALDFRNI NAAAAPARQL LFFGSAGMPP RASMPQQQQP PPPPHPPLHS  300
IMLVQPSPAP PTASVPMLLD SVPLVNSPTA ASKRVRLFGV NLDNPQPGTS AESSQDANAL  360
SLRTPGWQRP GPLRFFESPQ RGAESSAASS PSSSSSSKRE AHSSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-61891983113B3 domain-containing transcription factor NGA1
5os9_B4e-61891983113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G102059
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G102059_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276940.0KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001309881.10.0uncharacterized protein LOC103646035
SwissprotQ6EU301e-130Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A060D1M10.0A0A060D1M1_MAIZE; ABI3VP1 transcription factor (Fragment)
TrEMBLA0A3L6FNT70.0A0A3L6FNT7_MAIZE; B3 domain-containing protein
STRINGGRMZM2G102059_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-60B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Vega-Arregu
    Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.
    BMC Genomics, 2009. 10: p. 299
    [PMID:19580677]