PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G101511_P02
Common NameLOC103653213, ZEAMMB73_922217, Zm.33252
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 464aa    MW: 49880 Da    PI: 10.0558
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G101511_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP53.18.5e-171672132978
                        T-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP  29 kapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +++v    l++ fC    rfh l efD +krsCr+rL++hn+rrrk+q+
  GRMZM2G101511_P02 167 CTATV---SLQNVFCSSMKRFHLLAEFDADKRSCRKRLDGHNRRRRKPQP 213
                        33333...45678**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.956137211IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-15161216IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-4174198IPR004333Transcription factor, SBP-box
PfamPF031102.6E-9174210IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MKNLHLVRSF PPVATVPELL ARLFPFSRPP PALAAAAAHC SQAGLAFVSF TFSDALMRIN  60
ICCSPIVCSR FSPLPRTREL LRLLFRAVSC FHALWRRRDG MPPPPPPRYS AIGSSSSRRC  120
LLPGDSSPPP QMKRRHGLAC RVERDRGVLP ALATINHLMF RCRVVSCTAT VSLQNVFCSS  180
MKRFHLLAEF DADKRSCRKR LDGHNRRRRK PQPDTMASAS FIASQQGTRF SPFAHPRLEA  240
SWPPGVMKTE ESPYHITHQI PLGSSSSSRQ QHFVALGAAT PAYAKEGRRF PFLQEGEISF  300
ATGVVLEPPA AAPACQPLLR TGAPSESSGA GGSKMFSDQG LARVLDSDCA LSLLSAPANS  360
SGIDVSRMVR PTEHVPMAQQ PVVPGLQFGS ASWFPRPQAS TGGSFVPSCP AAVEGEQQLN  420
AVLGPNDSEV SMNYGGMFHV GGGSGGGEGS SDGGTSSSMP FSWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193210KRSCRKRLDGHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G101511
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000269|PubMed:16079849}.
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize (PubMed:16079849). Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif (PubMed:25943393). May repress the growth of lateral branches in length and numbers (PubMed:25943393). {ECO:0000269|PubMed:16079849, ECO:0000269|PubMed:25943393}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G101511_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9643610.0EU964361.1 Zea mays clone 278288 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349188.11e-180teosinte glume architecture 1
SwissprotQ49I550.0TGA1W_MAIZE; Teosinte glume architecture 1
TrEMBLQ49I540.0Q49I54_MAIZE; Teosinte glume architecture 1
STRINGGRMZM2G101511_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-17SBP family protein
Publications ? help Back to Top
  1. Wang H,Studer AJ,Zhao Q,Meeley R,Doebley JF
    Evidence That the Origin of Naked Kernels During Maize Domestication Was Caused by a Single Amino Acid Substitution in tga1.
    Genetics, 2015. 200(3): p. 965-74
    [PMID:25943393]