PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G101511_P01
Common NameLOC103653213, TGA1, ZEAMMB73_922217
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 432aa    MW: 45168.3 Da    PI: 7.4854
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G101511_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.16.7e-40105181278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC+adl ++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efD +krsCr+rL++hn+rrrk+q+
  GRMZM2G101511_P01 105 CAVDGCRADLGKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDADKRSCRKRLDGHNRRRRKPQP 181
                        **************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.5E-3496166IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.513102179IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-38103184IPR004333Transcription factor, SBP-box
PfamPF031102.9E-30105178IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDWDLNAAGA WDLAELERDH AAAAPSSGGH AANAAAAGTG TESRPPAPGA AGAPAECSVD  60
LKLGGMGECE PGAARREREA AAGAAKRPRP AGPGGQQQQQ QCPSCAVDGC RADLGKCRDY  120
HRRHKVCEAH SKTPVVVVAG REMRFCQQCS RFHLLAEFDA DKRSCRKRLD GHNRRRRKPQ  180
PDTMASASFI ASQQGTRFSP FAHPRLEASW PPGVMKTEES PYHITHQIPL GSSSSSRQQH  240
FVALGAATPA YAKEGRRFPF LQEGEISFAT GVVLEPPAAA PACQPLLRTG APSESSGAGG  300
SKMFSDQGLA RVLDSDCALS LLSAPANSSG IDVSRMVRPT EHVPMAQQPV VPGLQFGSAS  360
WFPRPQASTG GSFVPSCPAA VEGEQQLNAV LGPNDSEVSM NYGGMFHVGG GSGGGEGSSD  420
GGTSSSMPFS WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-251051781184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589KRPRP
2161178KRSCRKRLDGHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G101511
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000250|UniProtKB:Q49I55}.
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G101511_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9643610.0EU964361.1 Zea mays clone 278288 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349188.10.0teosinte glume architecture 1
SwissprotQ49I570.0TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A1B1MQA90.0A0A1B1MQA9_MAIZE; Squamosa promoter binding-like protein
STRINGSb07g026220.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-41SBP family protein
Publications ? help Back to Top
  1. Wang H, et al.
    The origin of the naked grains of maize.
    Nature, 2005. 436(7051): p. 714-9
    [PMID:16079849]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Preston JC,Wang H,Kursel L,Doebley J,Kellogg EA
    The role of teosinte glume architecture (tga1) in coordinated regulation and evolution of grass glumes and inflorescence axes.
    New Phytol., 2012. 193(1): p. 204-15
    [PMID:21954998]