PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G101511_P01 | ||||||||
Common Name | LOC103653213, TGA1, ZEAMMB73_922217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | SBP | ||||||||
Protein Properties | Length: 432aa MW: 45168.3 Da PI: 7.4854 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.1 | 6.7e-40 | 105 | 181 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adl ++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efD +krsCr+rL++hn+rrrk+q+ GRMZM2G101511_P01 105 CAVDGCRADLGKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDADKRSCRKRLDGHNRRRRKPQP 181 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.5E-34 | 96 | 166 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.513 | 102 | 179 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.76E-38 | 103 | 184 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-30 | 105 | 178 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MDWDLNAAGA WDLAELERDH AAAAPSSGGH AANAAAAGTG TESRPPAPGA AGAPAECSVD 60 LKLGGMGECE PGAARREREA AAGAAKRPRP AGPGGQQQQQ QCPSCAVDGC RADLGKCRDY 120 HRRHKVCEAH SKTPVVVVAG REMRFCQQCS RFHLLAEFDA DKRSCRKRLD GHNRRRRKPQ 180 PDTMASASFI ASQQGTRFSP FAHPRLEASW PPGVMKTEES PYHITHQIPL GSSSSSRQQH 240 FVALGAATPA YAKEGRRFPF LQEGEISFAT GVVLEPPAAA PACQPLLRTG APSESSGAGG 300 SKMFSDQGLA RVLDSDCALS LLSAPANSSG IDVSRMVRPT EHVPMAQQPV VPGLQFGSAS 360 WFPRPQASTG GSFVPSCPAA VEGEQQLNAV LGPNDSEVSM NYGGMFHVGG GSGGGEGSSD 420 GGTSSSMPFS WQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-25 | 105 | 178 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | KRPRP |
2 | 161 | 178 | KRSCRKRLDGHNRRRRKP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G101511 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000250|UniProtKB:Q49I55}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | SBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G101511_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964361 | 0.0 | EU964361.1 Zea mays clone 278288 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349188.1 | 0.0 | teosinte glume architecture 1 | ||||
Swissprot | Q49I57 | 0.0 | TGA1B_MAIZE; Teosinte glume architecture 1 | ||||
TrEMBL | A0A1B1MQA9 | 0.0 | A0A1B1MQA9_MAIZE; Squamosa promoter binding-like protein | ||||
STRING | Sb07g026220.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-41 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G101511_P01 |
Entrez Gene | 103653213 |
Publications ? help Back to Top | |||
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